schrodinger.application.jaguar.keywordDB module

class schrodinger.application.jaguar.keywordDB.Keyword(name, type, default, description=None, comment=None, index=0, boolean=None, qsite_allowed=None)

Bases: object

A class to hold keyword info.

__init__(name, type, default, description=None, comment=None, index=0, boolean=None, qsite_allowed=None)

Initialize self. See help(type(self)) for accurate signature.

__str__()

Return str(self).

__repr__()

Return repr(self).

get_macro()

Return C-style macro string from Keyword attributes

__class__

alias of builtins.type

__delattr__

Implement delattr(self, name).

__dict__ = mappingproxy({'__module__': 'schrodinger.application.jaguar.keywordDB', '__doc__': '\n A class to hold keyword info.\n ', '__init__': <function Keyword.__init__>, '__str__': <function Keyword.__str__>, '__repr__': <function Keyword.__repr__>, 'get_macro': <function Keyword.get_macro>, '__dict__': <attribute '__dict__' of 'Keyword' objects>, '__weakref__': <attribute '__weakref__' of 'Keyword' objects>})

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__module__ = 'schrodinger.application.jaguar.keywordDB'

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

__weakref__

list of weak references to the object (if defined)

class schrodinger.application.jaguar.keywordDB.Setting(name, code, value, description=None, comment=None)

Bases: object

A class to hold keyword setting info.

__init__(name, code, value, description=None, comment=None)

Initialize self. See help(type(self)) for accurate signature.

__str__()

Return str(self).

__repr__()

Return repr(self).

get_macro()

Return C-style macro string from Setting attributes

__class__

alias of builtins.type

__delattr__

Implement delattr(self, name).

__dict__ = mappingproxy({'__module__': 'schrodinger.application.jaguar.keywordDB', '__doc__': '\n A class to hold keyword setting info.\n ', '__init__': <function Setting.__init__>, '__str__': <function Setting.__str__>, '__repr__': <function Setting.__repr__>, 'get_macro': <function Setting.get_macro>, '__dict__': <attribute '__dict__' of 'Setting' objects>, '__weakref__': <attribute '__weakref__' of 'Setting' objects>})

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__module__ = 'schrodinger.application.jaguar.keywordDB'

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

__weakref__

list of weak references to the object (if defined)

class schrodinger.application.jaguar.keywordDB.DTDTreeBuilder

Bases: xml.etree.ElementTree.TreeBuilder

We create this subclass and redefine doctype() to avoid:

“DeprecationWarning: This method of XMLParser is deprecated.

Define doctype() method on the TreeBuilder target”

doctype(name, pubid, system)

__class__

alias of builtins.type

__delattr__

Implement delattr(self, name).

__dict__ = mappingproxy({'__module__': 'schrodinger.application.jaguar.keywordDB', '__doc__': '\n We create this subclass and redefine doctype() to avoid:\n "DeprecationWarning: This method of XMLParser is deprecated.\n Define doctype() method on the TreeBuilder target"\n ', 'doctype': <function DTDTreeBuilder.doctype>, '__dict__': <attribute '__dict__' of 'DTDTreeBuilder' objects>, '__weakref__': <attribute '__weakref__' of 'DTDTreeBuilder' objects>})

__dir__() → list

default dir() implementation

__eq__

Return self==value.

__format__()

default object formatter

__ge__

Return self>=value.

__getattribute__

Return getattr(self, name).

__gt__

Return self>value.

__hash__

Return hash(self).

__init__

Initialize self. See help(type(self)) for accurate signature.

__init_subclass__()

This method is called when a class is subclassed.

The default implementation does nothing. It may be overridden to extend subclasses.

__le__

Return self<=value.

__lt__

Return self<value.

__module__ = 'schrodinger.application.jaguar.keywordDB'

__ne__

Return self!=value.

__new__()

Create and return a new object. See help(type) for accurate signature.

__reduce__()

helper for pickle

__reduce_ex__()

helper for pickle

__repr__

Return repr(self).

__setattr__

Implement setattr(self, name, value).

__sizeof__() → int

size of object in memory, in bytes

__str__

Return str(self).

__subclasshook__()

Abstract classes can override this to customize issubclass().

This is invoked early on by abc.ABCMeta.__subclasscheck__(). It should return True, False or NotImplemented. If it returns NotImplemented, the normal algorithm is used. Otherwise, it overrides the normal algorithm (and the outcome is cached).

__weakref__

list of weak references to the object (if defined)

close()

data()

end()

start()

schrodinger.application.jaguar.keywordDB.load_keywords(filename)

Load keywords from an XML file in jaguar_keywords.dtd format. Return a list and dictionary of Keyword objects. Keyword names and values are stored in lowercase.