schrodinger.application.phase.packages.hypo_refine.job_utils module¶

Module with phase_hypo_refine job control functionality.

schrodinger.application.phase.packages.hypo_refine.job_utils.get_common_args(args)¶

Returns a command containing arguments that are common to all subjobs.

Parameters:	args (argparser.Namespace) – argparser.Namespace with command line options
Returns:	Command with common arguments
Return type:	list(str)

schrodinger.application.phase.packages.hypo_refine.job_utils.get_input_files(args)¶

Returns the names of the input files for the current job/subjob.

Parameters:	args (argparse.Namespace) – Command line arguments
Returns:	Input file names
Return type:	list(str)

schrodinger.application.phase.packages.hypo_refine.job_utils.get_output_hypo(args)¶

Returns the name of the hypothesis file to create.

Parameters:	args (argparse.Namespace) – Command line arguments
Returns:	Output hypothesis file name
Return type:	str

schrodinger.application.phase.packages.hypo_refine.job_utils.get_output_projects(args)¶

Returns the names of any zipped projects that would be created.

Parameters:	args (argparse.Namespace) – Command line arguments
Returns:	Output zipped project names
Return type:	list(str)

schrodinger.application.phase.packages.hypo_refine.job_utils.remove_output_files(args)¶

Removes output files that would be created in the launch directory by the parent job.

Parameters:	args (argparse.Namespace) – Command line arguments

schrodinger.application.phase.packages.hypo_refine.job_utils.save_hypo_for_job(args, hypo)¶

Saves the provided hypothesis as <jobname>.phypo and replaces args.hypo with this file name.

Parameters:	args (argparse.Namespace) – Command line arguments hypo (phase.PhpHypoAdaptor) – Hypothesis