schrodinger.application.phase.packages.hypo_refine.job_utils module¶
Module with phase_hypo_refine job control functionality.
Copyright Schrodinger LLC, All Rights Reserved.
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schrodinger.application.phase.packages.hypo_refine.job_utils.
get_common_args
(args)¶ Returns a command containing arguments that are common to all subjobs.
Parameters: args (argparser.Namespace) – argparser.Namespace with command line options Returns: Command with common arguments Return type: list(str)
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schrodinger.application.phase.packages.hypo_refine.job_utils.
get_input_files
(args)¶ Returns the names of the input files for the current job/subjob.
Parameters: args (argparse.Namespace) – Command line arguments Returns: Input file names Return type: list(str)
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schrodinger.application.phase.packages.hypo_refine.job_utils.
get_output_hypo
(args)¶ Returns the name of the hypothesis file to create.
Parameters: args (argparse.Namespace) – Command line arguments Returns: Output hypothesis file name Return type: str
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schrodinger.application.phase.packages.hypo_refine.job_utils.
get_output_projects
(args)¶ Returns the names of any zipped projects that would be created.
Parameters: args (argparse.Namespace) – Command line arguments Returns: Output zipped project names Return type: list(str)
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schrodinger.application.phase.packages.hypo_refine.job_utils.
remove_output_files
(args)¶ Removes output files that would be created in the launch directory by the parent job.
Parameters: args (argparse.Namespace) – Command line arguments
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schrodinger.application.phase.packages.hypo_refine.job_utils.
save_hypo_for_job
(args, hypo)¶ Saves the provided hypothesis as <jobname>.phypo and replaces args.hypo with this file name.
Parameters: - args (argparse.Namespace) – Command line arguments
- hypo (phase.PhpHypoAdaptor) – Hypothesis