schrodinger.application.desmond.starter.generator.common module¶
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schrodinger.application.desmond.starter.generator.common.
prepare_files_and_command_for_restart
(args: schrodinger.application.desmond.starter.ui.cmdline.BaseArgs) → Optional[List[str]]¶ Using the parse command line arguments, read the checkpoint, prepare the files needed for restarting and return the command to restart the job.
Returns
None
if the multisim stage could not be found.Parameters: args – Command line arguments.
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schrodinger.application.desmond.starter.generator.common.
is_fmp
(input_fname: str) → bool¶ Return True if the input_fname is for an fmp file. Returns False otherwise.
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schrodinger.application.desmond.starter.generator.common.
find_fmpdb_file
(args: schrodinger.application.desmond.starter.ui.cmdline.BaseArgs) → Optional[str]¶ Tries to find the fmpdb file’s name if it’s needed. If it cannot find, returns
None
and issues a warning message.
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schrodinger.application.desmond.starter.generator.common.
prepare_files_and_command_for_fep_restart_extend
(args: schrodinger.application.desmond.starter.ui.fep_plus.FepPlusArgs, edges: List[str], launcher_stage_name: str = 'fep_launcher') -> (typing.List[str], typing.List[str])¶