schrodinger.application.phase.pt_hypothesis module

Module for manipulating hypothesis entries in the project table.

class schrodinger.application.phase.pt_hypothesis.PhaseHypothesisMonitor

Bases: PyQt5.QtCore.QObject

This class provides signals that are emitted when hypothesis is changed. These signals should be emitted with the hypothesis entry id.

Variables:hypothesisChanged (QtCore.pyqtSignal) – signal emitted when hypothesis is changed
hypothesisChanged
__init__

Initialize self. See help(type(self)) for accurate signature.

blockSignals(self, bool) → bool
childEvent(self, QChildEvent)
children(self) → List[QObject]
connectNotify(self, QMetaMethod)
customEvent(self, QEvent)
deleteLater(self)
destroyed

destroyed(self, object: QObject = None) [signal]

disconnect(self)
disconnectNotify(self, QMetaMethod)
dumpObjectInfo(self)
dumpObjectTree(self)
dynamicPropertyNames(self) → List[QByteArray]
event(self, QEvent) → bool
eventFilter(self, QObject, QEvent) → bool
findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChild(self, Tuple, name: str = ‘’, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, Tuple, name: str = ‘’, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject]

inherits(self, str) → bool
installEventFilter(self, QObject)
isSignalConnected(self, QMetaMethod) → bool
isWidgetType(self) → bool
isWindowType(self) → bool
killTimer(self, int)
metaObject(self) → QMetaObject
moveToThread(self, QThread)
objectName(self) → str
objectNameChanged

objectNameChanged(self, str) [signal]

parent(self) → QObject
property(self, str) → Any
pyqtConfigure(...)

Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

receivers(self, PYQT_SIGNAL) → int
removeEventFilter(self, QObject)
sender(self) → QObject
senderSignalIndex(self) → int
setObjectName(self, str)
setParent(self, QObject)
setProperty(self, str, Any) → bool
signalsBlocked(self) → bool
startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int
staticMetaObject = <PyQt5.QtCore.QMetaObject object>
thread(self) → QThread
timerEvent(self, QTimerEvent)
tr(self, str, disambiguation: str = None, n: int = -1) → str
schrodinger.application.phase.pt_hypothesis.get_hypo_monitor()

This function returns global PhaseHypothesisMonitor object that should be used to monitor signals emitted when hypothesis is changed.

Returns:PhaseHypothesisMonitor
Return type:PhaseHypothesisMonitor
schrodinger.application.phase.pt_hypothesis.update_hypothesis_entry(hypo, entry_id)

Updates the structure in the project table for the given entry ID with the current PhaseHypothesis.

Parameters:entry_id (int or str) – entry id to set hypothesis to
schrodinger.application.phase.pt_hypothesis.get_hypothesis_from_project(entry_id)

Gets hypothesis with a given entry id from the project. It creates a hypothesis object from entries within same hypothesis group.

Parameters:entry_id (int) – hypothesis ID
Returns:Phase hypothesis
Return type:PhaseHypothesis
schrodinger.application.phase.pt_hypothesis.convert_project_hypotheses(project_handle)

Converts all hypothesis datafiles in the original Phase format into PhaseHypothesis (PhpHypoAdaptor) objects. If successful, each hypothesis is updated in the project to the new format. If the given entry ID does not have a corresponding hypothesis datafile, nothing is done.

Parameters:project_handle (int) – project.Project handle
schrodinger.application.phase.pt_hypothesis.is_hypothesis_entry(entry_id)

Returns whether project table row is a Phase hypothesis entry or not.

Parameters:entry_id (int) – entry ID for row in project table
Returns:True if the row is a hypothesis entry, false Otherwise
Return type:bool
schrodinger.application.phase.pt_hypothesis.get_hypothesis_entry_ids(entry_id)

Returns entry_ids of all entries in the group associated with the passed hypothesis entry ID.

Parameters:
  • hypo_entry_id – hypothesis entry ID
  • hypo_entry_id – int
Returns:

list of entry ids associated with the given hypothesis

Return type:

list