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2015-3 Schrodinger Python API
Package schrodinger :: Package application :: Package bioluminate :: Package antibody :: Module utils :: Class FrameworkTemplate
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Class FrameworkTemplate

object --+
         |
        FrameworkTemplate
Instance Methods [hide private]
 
__init__(self, score, light_alignment, heavy_alignment)
x.__init__(...) initializes x; see help(type(x)) for signature
 
__str__(self)
str(x)
str
createLabel(self, maxlen=15)
Returns: A label describing this FrameworkTemplate
schrodinger.ui.sequencealignment.sequence.Sequence
createSequence(self, region)
Returns: The Sequence object for this region - suitable for import into the SSV.
schrodinger.ui.sequencealignment.sequence.Sequence
getFilename(self, region)
Returns: The Sequence object for this region - suitable for import into the SSV.
schrodinger.ui.sequencealignment.sequence.Sequence
importRegion(self, region)
Returns: The Sequence object for this region - suitable for import into the SSV.

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, score, light_alignment, heavy_alignment)
(Constructor)

 

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:
  • score (float) - Search score for these alignments against the query
  • light_alignment (schrodinger.application.prime.packages.antibody.AntibodyAlignment) - The alignment object describing the Light Variable region alignment
  • heavy_alignment (schrodinger.application.prime.packages.antibody.AntibodyAlignment) - The alignment object describing the Heavy Variable region alignment
Overrides: object.__init__

__str__(self)
(Informal representation operator)

 

str(x)

Overrides: object.__str__
(inherited documentation)

createLabel(self, maxlen=15)

 
Parameters:
  • maxlen (int) - The maximum length for the name of each region template
Returns: str
A label describing this FrameworkTemplate

createSequence(self, region)

 
Parameters:
  • region (str) - One of
    • Light
    • Heavy
Returns: schrodinger.ui.sequencealignment.sequence.Sequence
The Sequence object for this region - suitable for import into the SSV.

getFilename(self, region)

 
Parameters:
  • region (str) - One of
    • Light
    • Heavy
Returns: schrodinger.ui.sequencealignment.sequence.Sequence
The Sequence object for this region - suitable for import into the SSV.

importRegion(self, region)

 
Parameters:
  • region (str) - One of
    • Light
    • Heavy
Returns: schrodinger.ui.sequencealignment.sequence.Sequence
The Sequence object for this region - suitable for import into the SSV.

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2015-3 Schrodinger Python API
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