Class SequenceFileDialog

Parameters:

• parent - the widget over which this dialog should be shown. If not given, the Dialog will be placed by PyQt.
• caption - the name that appears in the titlebar of this dialog. If not given the title will be the default PyQt caption.
• directory - the initial directory displayed in this dialog, default is the current directory.
• filter - the list of filters that can be applied to this directory the format is "filetype1 (*.ex1);; filetype2 (*.ex2, *.ex3)". examples:
  • "image files (*.png *.jpg *.bmp)"
  • "images (*.png *.xpm *.jpg);;text files (*.txt);;all files (*)"

  Default is all files.

• custom_sidebar - True if the Schrodinger sidebar should be used, False if the default PyQt sidebar should be used.
• sidebar_links - Use to create extra links in the left-hand sidebar of the dialog. the keys of the dictionary are a unique identifier for each link (note that 'home' and 'working' are already used), and the values are tuples of the form (path, name) where path and name are str, path indicates the path the sidebar link points to, and name is the name displayed for the link.

Overrides: ui.qt.filedialog.FileDialog.__init__

(inherited documentation)

Adds three widgets on the bottom of the dialog window that allow users to optionally:

• Align to query sequence
• Replace matching sequences
• Incorporate PDB files into Maestro

Convenience function that returns a single filename as selected by the user

The base class base_file_dialog documents the keyword arguments for this class.

Returns: str or None

full pathname of the file selected by the user, or None if Cancel was pressed

Overrides: ui.qt.filedialog.FileDialog.getOpenFileName

(inherited documentation)

DEFAULT_FILTERS

The default MSV filters.

Value:

';;'.join(['FASTA (*.fasta *.fst *.fas *.seq)', 'Maestro (*.mae *.maeg z *.mae.gz )', 'PDB (*.pdb *.ent)', 'SWISSPROT (*.sw *.sp *.swiss *.sw issprot)', 'GCG (*.gcg *.msf)', 'EMBL (*.embl *.emb)', 'PIR (*.pir)', 'All Files (*.*)'])

REFERENCE_FILTERS

Filters for reference sequences in homology model building.

Value:

';;'.join(['Common (*.fasta *.fst *.fas *.seq *.mae *.maegz *.mae.gz * .pdb *.ent ' '*.txt)', 'FASTA (*.fasta *.fst *.fas *.seq)', 'PDB (*.pd b *.ent)', 'Maestro (*.mae *.maegz *.mae.gz )', 'All Files (*.*)'])

STRUCTURE_FILTERS

Filters that have structures associated with them.

Value:

';;'.join(['Structure files (*.mae *.maegz *.mae.gz *.pdb *.ent)', 'Ma estro (*.mae *.maegz *.mae.gz )', 'PDB (*.pdb *.ent)',])