Package schrodinger :: Package application :: Package bioluminate :: Module pml_menus :: Class ColorAtomsByBFactor

Class ColorAtomsByBFactor

PyQt4.QtGui.QAction --+    
                      |    
                MAction --+
                          |
             object --+   |
                      |   |
       ColorRibbonMixin --+
                          |
                         ColorAtomsByBFactor

Instance Methods

[hide private]

makeSpectrum(self, sub_asl=None)
Color a structure like a rainbow! Each atom is colored based on its B-factor (temperature factor) - the range of colors is set based on the B-factors of the group being plotted.

command(self)
Color all the atoms like a rainbow based on their b-factors

Inherited from MAction: __init__

Inherited from ColorRibbonMixin: fixRibbons

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

makeSpectrum(self, sub_asl=None)

Color a structure like a rainbow! Each atom is colored based on its B-factor (temperature factor) - the range of colors is set based on the B-factors of the group being plotted. The minimum b-factor gets blue and the maximum gets deep red. The groups are determined to span equal ranges of b-factor (some groups may therefore contain no atoms. Color changes can be restricted to just atoms defined additionally by sub_asl.

Parameters:

sub_asl (str)

command(self)

Color all the atoms like a rainbow based on their b-factors

Overrides: MAction.command