Package schrodinger :: Package application :: Package bioluminate :: Package ssv :: Module toolbars :: Class ConsensusToolBar

[frames] | no frames]

Class ConsensusToolBar

PyQt4.QtGui.QToolBar --+
                       |
                      ConsensusToolBar

A toolbar associated with the viewer that will handle display options. These actions will be available through the toolbar:

Display the first protein in the sequence viewer
Display all proteins in the sequence viewer, superimposed
Toggle waters between visible/hidden
Toggle counterions between visible/hidden
Toggle ligands between visible/hidden
Display consensus waters
Display consensus counterions
Display consensus ligands

Instance Methods

[hide private]

__init__(self, parent)
The parent needs to be an instance of the SimplifiedSequenceViewer.

initActionStates(self)
Called when a set of structures are imported.

action

water_action(self)
Get the toggle_water action for the corresponding toolbar button

action

ion_action(self)
Get the toggle_counterions action for the corresponding toolbar button

action

ligand_action(self)
Get the toggle_ligands action for the corresponding toolbar button

_displayInWorkspace(self, asl)
Displays all atoms with asl in the workspace

_undisplayInWorkspace(self, asl)
Hides all atoms with asl in the workspace

_toggleView(self, asl)
Private method to display/hide atoms based on ASL.

_viewConsensus(self, asl)
Private method to display/hide consensus atoms based on ASL.

int

getReferenceEntryId(self)
Gets the PT entry ID for the reference structure.

viewFirstProtein(self)
Displays only the reference st in the workspace

viewAllProteins(self)
Includes all structures in the sequence viewer in the Workspace

toggleWaters(self)
Slot to show/hide all waters

consensusWaters(self)
Slot to show all consensus waters

toggleCounterions(self)
Slot to show/hide all ions

consensusCounterions(self)
Slot to show all consensus ions

toggleLigands(self)
Slot to show/hide all ligands

consensusLigands(self)
Slot to show all consensus ligands

Class Variables

[hide private]

ASL_WATER = '(water AND (NOT atom.ele H))'

ASL_IONS = 'ions'

ASL_LIGAND = '(((m.atoms 5-130)) and not ((ions) or '

Method Details

[hide private]

initActionStates(self)

Called when a set of structures are imported. This will:

Include all structures in the WS
Hide waters
Hide ions
Show all ligands

water_action(self)

Get the toggle_water action for the corresponding toolbar button

Returns: action

Decorators:

@property

ion_action(self)

Get the toggle_counterions action for the corresponding toolbar button

Returns: action

Decorators:

@property

ligand_action(self)

Get the toggle_ligands action for the corresponding toolbar button

Returns: action

Decorators:

@property

_toggleView(self, asl)

Private method to display/hide atoms based on ASL. This method must be called by a toggle slot method.

getReferenceEntryId(self)

Gets the PT entry ID for the reference structure.

Returns: int: Reference entry id