Package schrodinger :: Package application :: Package desmond :: Module fep_scholar_util :: Class MetaAtom

Class MetaAtom

object --+
         |
        MetaAtom

This is the meta atom class that mostly provides convinience functions. It is used by the scholar mapper functions.

Instance Methods

[hide private]

__init__(self, atom)
x.__init__(...) initializes x; see help(type(x)) for signature

index(self)

atom_type(self)
Return macromodel atom type.

xyz(self)

connected_atoms(self)
Return a list of atoms that are bonded to this atom.

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, atom)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

index(self)

Decorators:

@property

atom_type(self)

Return macromodel atom type.

Decorators:

@property

xyz(self)

Decorators:

@property

connected_atoms(self)

Return a list of atoms that are bonded to this atom.

Decorators:

@property

Class MetaAtom

__init__(self, atom) (Constructor)

index(self)

atom_type(self)

xyz(self)

connected_atoms(self)

init(self, atom)
(Constructor)