Package schrodinger :: Package application :: Package desmond :: Module report_helper
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Module report_helper

Classes [hide private]
  NumberedCanvas
Functions [hide private]
 
change_plot_colors(axis, spines=True, ticks=True, labels=True, polar=False)
 
new_page(Elements)
insert page break
 
add_vtable(Elements, table, style, width_list)
add table, where header is in the first column
 
add_table(Elements, table, style, col_width)
horizontal table, where the header is on the first row
 
add_and_parse_SMILES(smiles_str)
parse SMILES string such that it fits on the page
 
add_spacer(Elements)
 
get_image(fn, height, width)
 
report_add_ms_logo(Elements)
 
report_add_logo(Elements)
 
header(Elements, txt, style=HeaderStyle, klass=platypus.Paragraph, sep=0.3)
 
get_pargph(txt, fixed=False, fontsize=11, color='black', hAlign='left')
 
pargph(Elements, txt, fixed=False, fontsize=11, color='black')
 
generate_ligand_2d_placeholder(filename, natoms)
 
generate_aligned_2d_ligand_pair(fn_list, ct1, ct2, aligned_core)
Given two ligands, try to generate a 2d-plot where they're aligned.
 
generate_ligand_2d_image(filename, ligand_st=None, scene=None, crop=True, ret_size=False)
given a scene, or a ligand st, output the 2d image
 
crop_image(image_in)
get rid of the white background rgb=[255,255,255]
 
convertQimageToImage(qimg)
converts QImage object to PIL Image object, in order to crop
 
aspectScale(ix, iy, bx, by)
Scale image to fit into box (bx,by) keeping aspect ratio
Variables [hide private]
  styles = reportlab.lib.styles.getSampleStyleSheet()
  HeaderStyle = styles ["Heading1"]
  ParaStyle = styles ["Normal"]
  gray = rlcolors.Color(136./ 256, 136./ 256, 136./ 256)
  colors = ["#75D44A", "#BF58CB", "#D44B33", "#88C7D4", "#3B3628...
  replica_name = 'ABCDEFGHIJKLMNOPQRSTUVWXYZ'
Variables Details [hide private]

colors

Value:
["#75D44A", "#BF58CB", "#D44B33", "#88C7D4", "#3B3628", "#CE497C", "#7\
2D49B", "#59345F", "#5C7B37", "#707AC9", "#C78A3B", "#C7BD94", "#CE98B\
5", "#CECF4F", "#874236", "#597576"]