Package schrodinger :: Package application :: Package desmond :: Module stage :: Class PLAnalysis

Class PLAnalysis

         object --+        
                  |        
picklejar.Picklable --+    
                      |    
          cmj.StageBase --+
                          |
                         PLAnalysis

This class sets up and runs automatic analysis for protein-ligand complex

Nested Classes

[hide private]

Inherited from cmj.StageBase: __metaclass__

Instance Methods

[hide private]

__init__(self, *arg, **kwarg)
initialization of pl-analysis stage

crunch(self)
do all the setup and submit the calculations

hook_captured_successful_job(self, job)

Inherited from cmj.StageBase: __getstate__, __setstate__, capture, check_param, describe, determine, pack_stage, poststage, prestage, push, release, restart_subjobs

Inherited from cmj.StageBase (private): _effect, _gen_unique_jobname, _get_jobname_and_dir, _get_macro_dict, _log, _param_jlaunch_opt_check, _print, _reg_param_postcheck, _reg_param_precheck, _set

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

NAME = "pl_analysis"

PARAM = cmj._create_param_when_needed([...

Inherited from cmj.StageBase: count, stage_cls, stage_obj

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, *arg, **kwarg)
(Constructor)

initialization of pl-analysis stage

Overrides: object.__init__

crunch(self)

do all the setup and submit the calculations

Overrides: cmj.StageBase.crunch

hook_captured_successful_job(self, job)

Overrides: cmj.StageBase.hook_captured_successful_job: (inherited documentation)

Class Variable Details

[hide private]

PARAM

Value:

cmj._create_param_when_needed(["""
    DATA = {
       ligand_asl = ""
    }
    VALIDATE = {
       ligand_asl = {type = str}
    }
    """,])

Class PLAnalysis

__init__(self, *arg, **kwarg) (Constructor)

crunch(self)

hook_captured_successful_job(self, job)

PARAM

init(self, *arg, **kwarg)
(Constructor)