Package schrodinger :: Package application :: Package desmond :: Module systype :: Class DesmondTyper
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Class DesmondTyper

object --+    
         |    
 TyperBase --+
             |
            DesmondTyper

Nested Classes [hide private]

Inherited from TyperBase: __metaclass__

Instance Methods [hide private]

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods [hide private]
 
detect(struc, filename)
 
has_rule(rule)
 
check_rule(systype, rule)
 
check_system(struc, filename, rule)
 
get_trait(struc)

Inherited from TyperBase: prepare

Class Variables [hide private]
  NAME = "desmond"
  UNKNOWN = 0
  MATURE_REGULAR = 101
  MATURE_FEP = 102
  MATURE_AFEP = 103
  RAW_REGULAR = 201
  RAW_FEP = 202
  RAW_AFEP = 203
  STRING = {MATURE_REGULAR: "a mature model system created for r...
  RULE = {"mature_regular": [MATURE_REGULAR, MATURE_AFEP,], "mat...

Inherited from TyperBase: typer_cls

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

detect(struc, filename)
Static Method

 
Overrides: TyperBase.detect

has_rule(rule)
Static Method

 
Overrides: TyperBase.has_rule

check_rule(systype, rule)
Static Method

 
Overrides: TyperBase.check_rule

get_trait(struc)
Static Method

 
Overrides: TyperBase.get_trait

Class Variable Details [hide private]

STRING

Value:
{MATURE_REGULAR: "a mature model system created for regular molecular \
dynamics simulations", MATURE_FEP: "a mature model system created for \
FEP calculations", MATURE_AFEP: "a mature model system created for abs\
olute FEP calculations", RAW_REGULAR: "a raw geometry for regular mole\
cular dynamics simulations", RAW_FEP: "raw geometries created for FEP \
calculations", RAW_AFEP: "raw geometries created for absolute FEP calc\
ulations",}

RULE

Value:
{"mature_regular": [MATURE_REGULAR, MATURE_AFEP,], "mature_fep": [MATU\
RE_FEP, MATURE_AFEP,], "mature_afep": [MATURE_AFEP,], "mature": [MATUR\
E_REGULAR, MATURE_FEP, MATURE_AFEP,], "raw_regular": [RAW_REGULAR, RAW\
_AFEP,], "raw_fep": [RAW_FEP, RAW_AFEP,], "raw_afep": [RAW_AFEP,], "ra\
w": [RAW_REGULAR, RAW_FEP, RAW_AFEP,], "regular": [MATURE_REGULAR, MAT\
URE_AFEP, RAW_REGULAR, RAW_AFEP,], "fep": [MATURE_FEP, MATURE_AFEP, RA\
W_FEP, RAW_AFEP,], "afep": [MATURE_AFEP, RAW_AFEP,], "auto": [MATURE_R\
EGULAR, MATURE_FEP, MATURE_AFEP, RAW_REGULAR, RAW_FEP, RAW_AFEP,],}