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| copyProtein(self,
jobBasename) |
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| genFixedRestrainedProtein(self,
jobBasename) |
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| writeInput(self,
strFile,
outputDir,
options,
numLigands,
jobBasename) |
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| createFiles(self,
outputDir,
numLigands,
jobBasename) |
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| makeSubstitutions(self,
input,
lig,
jobBasename) |
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| writeCommandScript(self,
outputDir,
numLigands,
jobBasename) |
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| makeLigandList(self,
numLigands,
jobBasename) |
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| setVariables(self,
options) |
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