Module stage

Classes

DotPrinter
Class for printing a progress period or percentage every N number of iterations.

StageInput
Class defining a stage input

StageOutput
Class defining a stage output

Stage

Functions

get_time(t1, t2=0)
Returns a string of the time difference between t2 and t1 in human readable format.

_host_is_queue(hostname)
Return True if specified host is a queue

Restart(restart_file, ignored=None)
Run this function in order to recover a saved Stage instance.

Variables

__doc__ = ...

_version = "$Revision: 1.119 $"

logger = log.get_logger("schrodinger.pipeline.stage")

handler = logging.StreamHandler(sys.stdout)

DEBUG = log.get_environ_log_level() <= log.DEBUG

Function Details

Returns a string of the time difference between t2 and t1 in human readable format. t2 and t1 are times, as returned by time.time()

Variables Details

Value:

"""
Base classes for Pipeline stages.

To create a stage instance:

    stageobj = YourStage(<stagename>)

    # Add keywords:
...