Module captermini

Classes

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CapTermini

Functions

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res_can_be_capped(res)
Determines whether a fragment is able to be capped.

_increment_inscode(inscode)
Returns next inscode above <inscode>

cap_termini(st)
Cap the termini on the specified st Function interface for CapTermini class

Variables

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__doc__ = ...

INSCODES = [' ', 'A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'I', ...

Function Details

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res_can_be_capped(res)

Determines whether a fragment is able to be capped. Returns CAPN if specified residue can be N-capped, CAPC if C-capped; DONTCAP if it can't be capped.

Variables Details

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doc

Value:

"""
Module for capping uncapped terminal residues in a protein structure b
y
adding NME or ACE caps as appropriate.

Usage: capped_st = cap_termini(input_st)

Copyright Schrodinger, LLC. All rights reserved.
...

INSCODES

Value:

[' ', 'A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'I', 'J', 'K', 'L', 'M',
 'N', 'O', 'P', 'Q', 'R', 'S', 'T', 'U', 'V', 'W', 'X', 'Y', 'Z']