Package schrodinger :: Package protein :: Module helix

Module helix

Functions

get_fragment_structure(fragname)

grow_fragment(st, fromatom, toatom, fraggroup, fragname, direction=None)
Grow the given fragment to the given ct, in alpha-helix configuration.

process_sequence(line)

Variables

[hide private]

__doc__ = ...

_pdb_codes = [("A", "ALA"), ("C", "CYS"), ("D", "ASP"), ("E", ...

_pdb_lookup = dict(_pdb_codes)

Variables Details

[hide private]

doc

Value:

"""

Module for converting residue sequences to 3D structures with an a-hel
ix secondary
structure.

Copyright Schrodinger, LLC. All rights reserved.
"""

_pdb_codes

Value:

[("A", "ALA"), ("C", "CYS"), ("D", "ASP"), ("E", "GLU"), ("F", "PHE"),
 ("G", "GLY"), ("H", "HIS"), ("I", "ILE"), ("K", "LYS"), ("L", "LEU"),
 ("M", "MET"), ("N", "ASN"), ("P", "PRO"), ("Q", "GLN"), ("R", "ARG"),
 ("S", "SER"), ("T", "THR"), ("V", "VAL"), ("W", "TRP"), ("Y", "TYR")]