Package schrodinger :: Package trajectory :: Module desmondsimulation :: Class DesmondSimulation
[hide private]
[frames] | no frames]

Class DesmondSimulation

Instance Methods [hide private]
 
__init__(self, cmsfile, trjfile)
 
total_frame(self)
Total number of frames.
 
getFrame(self, n)
Return N-th frame
 
getFrameTime(self, n)
return chemical time of frame n.
 
getTimes(self)
return all chemical times that associate with this trajectory.
 
charge(self)
Charges of individual atoms in the structure.
 
mass(self)
Mass of individual atoms in the structure.
 
total_mass(self)
Total mass of all atoms in the structure.
 
writeCms(self, cmsfilename, n)
Write a cms file with coordinate and velocity from the specified frame.
 
getFrameStructure(self, n)
Return a schrodinger.structure.Structure object with coordinate, velocity and box properties for frame n.
 
frame_iter(self)
 
analyze(self, analysis_tools)
Method Details [hide private]

total_frame(self)

 

Total number of frames.

Decorators:
  • @property

charge(self)

 

Charges of individual atoms in the structure.

Decorators:
  • @property

mass(self)

 

Mass of individual atoms in the structure.

Decorators:
  • @property

total_mass(self)

 

Total mass of all atoms in the structure.

Decorators:
  • @property

frame_iter(self)

 
Decorators:
  • @property