Package schrodinger :: Package utils :: Module mmutil
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Module mmutil

Classes [hide private]
  SwigPyIterator
Functions [hide private]
 
_swig_setattr_nondynamic(self, class_type, name, value, static=1)
 
_swig_setattr(self, class_type, name, value)
 
_swig_getattr(self, class_type, name)
 
_swig_repr(self)
repr(x)
 
_swig_setattr_nondynamic_method(set)
Variables [hide private]
  _newclass = 1
  PERL_FEATURE_FLAGS = ('JOBCON_DETACHED_JOBS', 'JOBCON_JSERVER_...
  ASL_NAME_SEARCH_SPEEDUP = 0
  BIOLUM_EPIT_IDENT = 2
  CANVAS_PROCESS_MONOMER = 3
hash(x)
  DATIVE_REFINEMENT_1 = 4
  DESMOND_FUEL = 5
  DUMMY_FEATURE_0 = 7
  DUMMY_FEATURE_1 = 8
  ELASTIC_CONSTANTS = 11
  FEP_MAPPER_ALIGN_CORE_ONLY = 13
  FEP_MAPPER_CHARGE = 14
  FFBUILDER_DIRECT_FIT = 15
  FFBUILDER_PBF_OPT = 16
  FFBUILDER_ROT_SEL = 17
  HIERARCHICAL_PROJECT_TABLE = 21
  JAGUAR_OMPI = 23
  JOBCON_DETACHED_JOBS = 24
  JOBCON_JSERVER_GO = 25
  JOBCON_RESTRICT_DISKIO = 26
  JOB_ARRAYS = 27
  LEWIS_NANOTUBES = 28
  LIBUNWIND_PROFILER = 29
  LIGAND_FEP_MENUS = 30
  MAESTRO_LINUX_PROFILER = 33
  MAESTRO_STRUCTURE_MONITOR = 35
  MMCANON_EQUIVALENT_SITES = 36
  MMFFLD_StrPrep_SKIP_1Dto3D = 37
  MMFFLD_StrPrep_SKIP_CGEN = 38
  MMFFLD_StrPrep_SKIP_STR_PREP = 39
  MMFFLD_USE_METAL_STRUCTURE_CLEANUP = 40
  MMPATTY_NEW_X_FOR_DATIVE_BOND_ONLY = 41
  MMPATTY_NEW_X_TREATMENT_FOR_ZOB = 42
  NEW_ADD_STRUCTURE = 43
  OPLS_NAME_CHANGE = 47
  OPLS_SKIP_CM1A = 48
  OPLS_VIRTUAL_SITES = 49
  OPTOELECTRONICS_FLUORESCENCE = 50
  PATCH_ANALYZER = 51
  PRIME_ENTROPY = 53
  PROJECT_HIERARCHICAL_GROUPING = 54
  RADICALS_FORCE_OFF = 55
  RADICALS_FORCE_ON = 56
  SCIENTIFIC_SOLUTIONS_MENUS = 57
  SET_QUEUE_RESOURCES = 59
  SWIG_PLOP = 61
  SYSBUILDER_MMFFLD_PBC = 62
  TRANSFERAGENT_AS_PROCESS = 63
  USE_05_ES_PROTEIN_SCALE = 64
  USE_05_LJ_PROTEIN_SCALE = 65
  USE_FAST3D_FOR_2D_TO_3D_CONVERSION = 67
  USE_LIGPREP_FOR_2D_TO_3D_CONVERSION = 69
  USE_OPLS2005_LIGAND = 70
  USE_OPLS2005_PROTEIN = 71
  WORKSPACE_FEEDBACK = 73
  ZOB_REFINEMENT_1 = 75
  FEATURE_NOT_PRESENT = -1
  FEATURE_DISABLED = 0
  FEATURE_ENABLED = 1
  PATH_MAX = 1024
  MMFILE_NO_MORE_FILES = -2
  MMFILE_ERROR = -1
  MMFILE_OK = 0
  MMFILE_FILE = 0
  MMFILE_DIR = 1
  MMFILE_FILESEP_WIN32 = '\\'
  MMFILE_FILESEP_UNIX = '/'
  MMFILE_DRIVESEP_WIN32 = ':'
  MMFILE_DRIVESEP_UNIX = ''
  MMFILE_PATHSEP = ':'
  MMFILE_FILESEP = '/'
  MMFILE_DRIVESEP = ''
  MMFILE_PATH_MMSHARE_DATA = '$USERDATA/mmshare:$MMSHARE_EXEC/.....
  MMFILE_PATH_MAESTRO_DATA = '$USERDATA/maestro:$MAESTRO_EXEC/.....
  MMFILE_PATH_MACROMODEL = '$USERDATA/macromodel:$MMOD_EXEC/../....
  MMFILE_PATH_JAGUAR_DATA = '$JAGUAR_EXEC/../../data:$JAGUAR_EXE...
  MMFILE_PATH_PSP_DATA = '$USERDATA/psp:$PSP_EXEC/../../data:'
  MMFILE_PATH_QIKPROP = '$USERDATA/qikprop:$QIKPROP_EXEC:$QIKPRO...
  MMFILE_PATH_COMBIGLIDE = '$USERDATA/combiglide:$VCS_EXEC/../.....
  MMFILE_PATH_DESMOND = '$USERDATA/desmond:$DESMOND_EXEC/../../d...
  _MMFILE_FILESEP = 0
  _MMFILE_DRIVESEP = 1
  _MMFILE_PATH_MMSHARE_DATA = 2
  _MMFILE_PATH_MAESTRO_DATA = 3
hash(x)
  _MMFILE_PATH_MACROMODEL = 4
  _MMFILE_PATH_JAGUAR_DATA = 5
  _MMFILE_PATH_PSP_DATA = 6
  _MMFILE_PATH_QIKPROP = 7
  _MMFILE_PATH_COMBIGLIDE = 8
  _MMFILE_PATH_DESMOND = 9
  MMFILE_COPY_REGULAR = 0
  MMFILE_COPY_HARDLINK = 1
  MMFILE_COPY_SYMLINK = 2
  LIBRARY_PATH_ENV = 'PATH'
  __package__ = 'schrodinger.utils'
Variables Details [hide private]

PERL_FEATURE_FLAGS

Value:
('JOBCON_DETACHED_JOBS',
 'JOBCON_JSERVER_GO',
 'JOBCON_RESTRICT_DISKIO',
 'JOB_ARRAYS',
 'SET_QUEUE_RESOURCES',
 'TRANSFERAGENT_AS_PROCESS')

MMFILE_PATH_MMSHARE_DATA

Value:
'$USERDATA/mmshare:$MMSHARE_EXEC/../../data:$MMSHARE_EXEC/../../data/r\
es:$MMSHARE_EXEC/../../data/xres'

MMFILE_PATH_MAESTRO_DATA

Value:
'$USERDATA/maestro:$MAESTRO_EXEC/../../data:$MAESTRO_EXEC/../../data/r\
es'

MMFILE_PATH_MACROMODEL

Value:
'$USERDATA/macromodel:$MMOD_EXEC/../../data'

MMFILE_PATH_JAGUAR_DATA

Value:
'$JAGUAR_EXEC/../../data:$JAGUAR_EXEC/../../uff:'

MMFILE_PATH_QIKPROP

Value:
'$USERDATA/qikprop:$QIKPROP_EXEC:$QIKPROP_EXEC/../../data'

MMFILE_PATH_COMBIGLIDE

Value:
'$USERDATA/combiglide:$VCS_EXEC/../../data:$COMBIGLIDE_EXEC/../../data\
'

MMFILE_PATH_DESMOND

Value:
'$USERDATA/desmond:$DESMOND_EXEC/../../data:$MMSHARE_EXEC/../../data/d\
esmond'