Package schrodinger :: Package application :: Package msv :: Package io :: Module seqio :: Class ChainConverter

Class ChainConverter

object --+
         |
        ChainConverter

Instance Methods

__init__(self, chain)
x.__init__(...) initializes x; see help(type(x)) for signature

getSecondaryStructure(self)
Returns: list of secondary structure values, same length as protein

validateInput(self)
Returns: True if input chain is a protein; otherwise False

bool

_isSequenceValid(self, residues)
Test whether given sequence is valid.

makeSequence(self)
Returns a sequence

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

Inherited from object: __class__

Method Details

x.__init__(...) initializes x; see help(type(x)) for signature

Test whether given sequence is valid. A sequence is considered valid if it contains at least one residue with C-alpha atom.

Parameters:

Returns: bool

True if seq is valid.