schrodinger.application.msv.io.structure_model.AbstractStructureModel

Class AbstractStructureModel

object --+ | sip.simplewrapper --+ | sip.wrapper --+ | PyQt4.QtCore.QObject --+ | AbstractStructureModel

Instance Methods

[hide private]

structureModelChanged(...)

structureSelectionChanged(...)

__init__(self, parent=None)
x.__init__(...) initializes x; see help(type(x)) for signature

dict (sequence, list)

getResidueColors(self, sequences)
Returns a dictionary mapping sequences to rgb code arrays.

list of schrodinger.applicaiton.msv.alignment.Alignment

getAlignment(self)
Returns an alignment of sequences exported from the structure model and converted for use in the msv.

setResidueSelection(self, selection_info)
Sets selection in workspace using specified selection info

Inherited from PyQt4.QtCore.QObject: __getattr__, blockSignals, childEvent, children, connect, connectNotify, customEvent, deleteLater, destroyed, disconnect, disconnectNotify, dumpObjectInfo, dumpObjectTree, dynamicPropertyNames, emit, event, eventFilter, findChild, findChildren, inherits, installEventFilter, isWidgetType, killTimer, metaObject, moveToThread, objectName, parent, property, pyqtConfigure, receivers, removeEventFilter, sender, senderSignalIndex, setObjectName, setParent, setProperty, signalsBlocked, startTimer, thread, timerEvent, tr, trUtf8

Inherited from sip.simplewrapper: __new__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

Inherited from PyQt4.QtCore.QObject: staticMetaObject

init(self, parent=None)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

getResidueColors(self, sequences)

Returns a dictionary mapping sequences to rgb code arrays.

The rgb code arrays specify the color of the residues in the corresponding sequence on the structure model

Parameters:

sequences - An iterable of schrodinger.applicaiton.msv.sequence.ProteinSequence

Returns: dict (sequence, list)

A mapping of sequences to rgb code arrays

setResidueSelection(self, selection_info)

Sets selection in workspace using specified selection info

Parameters:

selection_info (dict) - A dictionary mapping sequences to selected residues

Class AbstractStructureModel

__init__(self, parent=None) (Constructor)

getResidueColors(self, sequences)

setResidueSelection(self, selection_info)

init(self, parent=None)
(Constructor)