Package schrodinger :: Package application :: Package phase :: Module phase_markers :: Class PhaseFeatureMarker

Class PhaseFeatureMarker

object --+
         |
        PhaseFeatureMarker

Class defining a single Phase marker.

Instance Methods

__init__(self, sites, color, selected, entry_id, feature_name)
x.__init__(...) initializes x; see help(type(x)) for signature

tuple

_createFeature(self, sites, color, opacity, entry_id)
Create markers for the given pharmacophore sites.

tuple

_createAromaticFeature(self, sites, color, opacity, entry_id)
Create markers for the given aromatic feature.

drawLabels(self)
Draw the labels for the sites of this features in the Workspace.

show(self)

hide(self)

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

int ARROW_RADII = 0.15
radius of the arrow that is drawn between pharmacophore site and projected points.

int SPHERE_RADII = 0.8
radius of the pharmacophore site

TORUS_RADII = 0.5

TORUS_TUBE_RADII = 0.15

OPACITY_DEFAULT = 0.7

OPACITY_SELECTED = 1.0

Instance Variables

_phase_features
A dictionary containing all pharmacophore feature

Properties

Inherited from object: __class__

Method Details

x.__init__(...) initializes x; see help(type(x)) for signature

Create markers for the given pharmacophore sites.

Parameters:

sites (list) - list of PhpSite objects, where the first element is always pharmacophore site, which is followed by one or more sites for projected points ('Q' site type).
color (list) - list of float rgb values that define color of this feature's markers
opacity (float) - feature marker opacity
entry_id (int) - entry id of the structure that this feature is associated with

Returns: tuple

Create markers for the given aromatic feature.

Parameters:

sites (list) - list of PhpSite objects, where the first element is always pharmacophore site, which is followed by one or more sites for projected points ('Q' site type).
color (list) - list of float rgb values that define color of this feature's markers
opacity (float) - feature marker opacity
entry_id (int) - entry id of the structure that this feature is associated with

Returns: tuple