Package schrodinger :: Package infra :: Module mmsurf
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Module mmsurf

C++ wrapper for surface related functionality

Classes [hide private]
  SwigPyIterator
  SwigIntVector
  SwigUnsignedIntVector
  SwigStringVector
  SwigDoubleVector
  SwigUInt64Vector
  SwigIntIntPair
  SwigVectorIntIntPair
  SwigUnsignedIntVector2
  SwigDoubleVector3
  ostream
  ofstream
  istream
  ifstream
  TemporaryOFStream
A subclass of ofstream that uses the tempfile module to get a temporary filename and automatically deletes itself at garbage collection.
Functions [hide private]
 
_swig_setattr_nondynamic(self, class_type, name, value, static=1)
 
_swig_setattr(self, class_type, name, value)
 
_swig_getattr(self, class_type, name)
 
_swig_repr(self)
repr(x)
 
_swig_setattr_nondynamic_method(set)
Variables [hide private]
  _newclass = 1
  mmvol_get_grid_data = _mmsurf.mmvol_get_grid_data
  mmvol_set_grid_data = _mmsurf.mmvol_set_grid_data
  cout = <schrodinger.infra.mmsurf.ostream; proxy of <Swig Objec...
  cerr = <schrodinger.infra.mmsurf.ostream; proxy of <Swig Objec...
  MMVISIO_SMAP_NO_FILE = -6
  MMVISIO_SMAP_BAD_FORMAT = -5
  MMVISIO_SMAP_BAD_DATA = -4
  MMVISIO_FATAL = -3
  MMVISIO_ERROR = -2
  MMVISIO_WARNING = -1
  MMVISIO_OK = 0
hash(x)
  MMVISIO_READ = 1
  MMVISIO_WRITE = 2
  MMVISIO_READ_AND_WRITE = 3
hash(x)
  MMVISIO_UNKNOWN = 0
hash(x)
  MMVISIO_VOLUME = 1
  MMVISIO_SURFACE = 2
  MMVISIO_FORMAT_CNS_ASCII = 0
hash(x)
  MMVISIO_FORMAT_CNS_BINARY = 1
  MMVISIO_FORMAT_CCP4 = 2
  MMVISIO_FORMAT_VIS = 3
hash(x)
  MMVISIO_FORMAT_UNKNOWN = 4
  MMVISIO_CNS_ASCII = 'CNS (formatted)'
  MMVISIO_CNS_BINARY = 'CNS (unformatted)'
  mmvisio_get_file_format = _mmsurf.mmvisio_get_file_format
  mmvisio_read_jaguar = _mmsurf.mmvisio_read_jaguar
  mmvisio_read_cns = _mmsurf.mmvisio_read_cns
  mmvisio_write_cns = _mmsurf.mmvisio_write_cns
  mmvisio_read_ccp4 = _mmsurf.mmvisio_read_ccp4
  mmvisio_write_ccp4 = _mmsurf.mmvisio_write_ccp4
  mmvisio_read_volume_from_file = _mmsurf.mmvisio_read_volume_fr...
  mmvisio_read_surface_from_file = _mmsurf.mmvisio_read_surface_...
  mmvisio_write_volume_to_file = _mmsurf.mmvisio_write_volume_to...
  mmvisio_write_surface_to_file = _mmsurf.mmvisio_write_surface_...
  mmvisio_initialize = _mmsurf.mmvisio_initialize
  mmvisio_terminate = _mmsurf.mmvisio_terminate
  mmvisio_refcount = _mmsurf.mmvisio_refcount
  mmvisio_errhandler = _mmsurf.mmvisio_errhandler
  mmvisio_open_file = _mmsurf.mmvisio_open_file
  mmvisio_close_file = _mmsurf.mmvisio_close_file
  mmvisio_is_mmvisio_file = _mmsurf.mmvisio_is_mmvisio_file
  mmvisio_check_file_sanity = _mmsurf.mmvisio_check_file_sanity
  mmvisio_read_dataset_category = _mmsurf.mmvisio_read_dataset_c...
  mmvisio_read_volume_header = _mmsurf.mmvisio_read_volume_header
  mmvisio_read_volume_fulldata = _mmsurf.mmvisio_read_volume_ful...
  mmvisio_write_volume_fulldata = _mmsurf.mmvisio_write_volume_f...
  mmvisio_read_volume_hyperslab = _mmsurf.mmvisio_read_volume_hy...
  mmvisio_write_volume_hyperslab = _mmsurf.mmvisio_write_volume_...
  mmvisio_read_volume_voxel = _mmsurf.mmvisio_read_volume_voxel
  mmvisio_write_volume_voxel = _mmsurf.mmvisio_write_volume_voxel
  mmvisio_read_surface_header = _mmsurf.mmvisio_read_surface_header
  mmvisio_read_surface = _mmsurf.mmvisio_read_surface
  mmvisio_write_surface = _mmsurf.mmvisio_write_surface
  mmvisio_read_volume_name = _mmsurf.mmvisio_read_volume_name
  mmvisio_write_volume_name = _mmsurf.mmvisio_write_volume_name
  mmvisio_read_volume_grid_type = _mmsurf.mmvisio_read_volume_gr...
  mmvisio_write_volume_grid_type = _mmsurf.mmvisio_write_volume_...
  mmvisio_read_volume_data_type = _mmsurf.mmvisio_read_volume_da...
  mmvisio_write_volume_data_type = _mmsurf.mmvisio_write_volume_...
  mmvisio_read_volume_property_name = _mmsurf.mmvisio_read_volum...
  mmvisio_write_volume_property_name = _mmsurf.mmvisio_write_vol...
  mmvisio_read_volume_author_name = _mmsurf.mmvisio_read_volume_...
  mmvisio_write_volume_author_name = _mmsurf.mmvisio_write_volum...
  mmvisio_read_volume_ccp4_data = _mmsurf.mmvisio_read_volume_cc...
  mmvisio_write_volume_ccp4_data = _mmsurf.mmvisio_write_volume_...
  mmvisio_read_volume_comment = _mmsurf.mmvisio_read_volume_comment
  mmvisio_write_volume_comment = _mmsurf.mmvisio_write_volume_co...
  mmvisio_read_volume_num_dimensions = _mmsurf.mmvisio_read_volu...
  mmvisio_write_volume_num_dimensions = _mmsurf.mmvisio_write_vo...
  mmvisio_read_volume_origin = _mmsurf.mmvisio_read_volume_origin
  mmvisio_write_volume_origin = _mmsurf.mmvisio_write_volume_origin
  mmvisio_read_volume_orientation = _mmsurf.mmvisio_read_volume_...
  mmvisio_write_volume_orientation = _mmsurf.mmvisio_write_volum...
  mmvisio_read_volume_num_components = _mmsurf.mmvisio_read_volu...
  mmvisio_write_volume_num_components = _mmsurf.mmvisio_write_vo...
  mmvisio_read_volume_dimensions = _mmsurf.mmvisio_read_volume_d...
  mmvisio_write_volume_dimensions = _mmsurf.mmvisio_write_volume...
  mmvisio_read_volume_axis_scales = _mmsurf.mmvisio_read_volume_...
  mmvisio_write_volume_axis_scales = _mmsurf.mmvisio_write_volum...
  mmvisio_read_volume_sampling_locations = _mmsurf.mmvisio_read_...
  mmvisio_write_volume_sampling_locations = _mmsurf.mmvisio_writ...
  mmvisio_read_volume_unit_cell_is_oblique = _mmsurf.mmvisio_rea...
  mmvisio_write_volume_unit_cell_is_oblique = _mmsurf.mmvisio_wr...
  mmvisio_read_volume_unit_cell_abc = _mmsurf.mmvisio_read_volum...
  mmvisio_write_volume_unit_cell_abc = _mmsurf.mmvisio_write_vol...
  mmvisio_read_volume_unit_cell_angle = _mmsurf.mmvisio_read_vol...
  mmvisio_write_volume_unit_cell_angle = _mmsurf.mmvisio_write_v...
  mmvisio_read_volume_unit_cell_dims = _mmsurf.mmvisio_read_volu...
  mmvisio_write_volume_unit_cell_dims = _mmsurf.mmvisio_write_vo...
  mmvisio_read_volume_sigma = _mmsurf.mmvisio_read_volume_sigma
  mmvisio_write_volume_sigma = _mmsurf.mmvisio_write_volume_sigma
  mmvisio_read_surface_name = _mmsurf.mmvisio_read_surface_name
  mmvisio_read_surface_isovalue = _mmsurf.mmvisio_read_surface_i...
  mmvisio_read_surface_boundingbox = _mmsurf.mmvisio_read_surfac...
  mmvisio_read_surface_num_vertices = _mmsurf.mmvisio_read_surfa...
  mmvisio_read_surface_num_patches = _mmsurf.mmvisio_read_surfac...
  mmvisio_read_surface_num_isoline_patches = _mmsurf.mmvisio_rea...
  mmvisio_read_surface_num_lines = _mmsurf.mmvisio_read_surface_...
  mmvisio_read_surface_colorramp_name = _mmsurf.mmvisio_read_sur...
  mmvisio_read_surface_show_legend = _mmsurf.mmvisio_read_surfac...
  mmvisio_read_surface_map_min = _mmsurf.mmvisio_read_surface_ma...
  mmvisio_read_surface_map_max = _mmsurf.mmvisio_read_surface_ma...
  mmvisio_read_surface_esp_colorramp_name = _mmsurf.mmvisio_read...
  mmvisio_read_surface_esp_min = _mmsurf.mmvisio_read_surface_es...
  mmvisio_read_surface_esp_max = _mmsurf.mmvisio_read_surface_es...
  mmvisio_read_surface_num_isoline_vertices = _mmsurf.mmvisio_re...
  mmvisio_read_surface_use_active_grid = _mmsurf.mmvisio_read_su...
  mmvisio_write_surface_use_active_grid = _mmsurf.mmvisio_write_...
  mmvisio_read_surface_active_grid_size = _mmsurf.mmvisio_read_s...
  mmvisio_write_surface_active_grid_size = _mmsurf.mmvisio_write...
  mmvisio_read_surface_active_grid_center = _mmsurf.mmvisio_read...
  mmvisio_write_surface_active_grid_center = _mmsurf.mmvisio_wri...
  mmvisio_is_surface_style_defined = _mmsurf.mmvisio_is_surface_...
  mmsurf_get_all_vertex_coords = _mmsurf.mmsurf_get_all_vertex_c...
  mmsurf_get_all_vertex_normals = _mmsurf.mmsurf_get_all_vertex_...
  mmsurf_get_all_vertex_colors = _mmsurf.mmsurf_get_all_vertex_c...
  mmsurf_smooth_colors = _mmsurf.mmsurf_smooth_colors
  mmsurf_smooth_colors3 = _mmsurf.mmsurf_smooth_colors3
  mmsurf_get_all_patches = _mmsurf.mmsurf_get_all_patches
  mmsurf_set_all_patches = _mmsurf.mmsurf_set_all_patches
  mmsurf_set_all_vertex_colors = _mmsurf.mmsurf_set_all_vertex_c...
  MAX_RANK = 8
  MMVOL_UNKNOWN_SIGMA = -999.0
  MMVOL_FATAL = -3
  MMVOL_ERROR = -2
  MMVOL_WARNING = -1
  MMVOL_OK = 0
hash(x)
  MMVOL_UNKNOWN_GRID = 0
hash(x)
  MMVOL_REGULAR = 1
  MMVOL_RECTILINEAR = 2
  MMVOL_IRREGULAR = 3
hash(x)
  MMVOL_UNKNOWN = 0
hash(x)
  MMVOL_CHAR = 1
  MMVOL_UNSIGNED_CHAR = 2
  MMVOL_SHORT = 3
hash(x)
  MMVOL_UNSIGNED_SHORT = 4
  MMVOL_INT = 5
  MMVOL_UNSIGNED_INT = 6
  MMVOL_LONG = 7
  MMVOL_UNSIGNED_LONG = 8
  MMVOL_FLOAT = 9
  MMVOL_DOUBLE = 10
  MMVOL_COLOR_INVALID = 0
hash(x)
  MMVOL_COLOR_LOWEST_ENUM = 1
  MMVOL_COLOR_BLACK = 1
  MMVOL_COLOR_GRAY = 2
  MMVOL_COLOR_DARK_BLUE = 3
hash(x)
  MMVOL_COLOR_BLUE = 4
  MMVOL_COLOR_LIGHT_BLUE = 5
  MMVOL_COLOR_AQUAMARINE = 6
  MMVOL_COLOR_TURQUOISE = 7
  MMVOL_COLOR_SPRING_GREEN = 8
  MMVOL_COLOR_DARK_GREEN = 9
  MMVOL_COLOR_GREEN = 10
  MMVOL_COLOR_LIME_GREEN = 11
  MMVOL_COLOR_YELLOW_GREEN = 12
  MMVOL_COLOR_YELLOW = 13
  MMVOL_COLOR_ORANGE = 14
  MMVOL_COLOR_MAROON = 15
  MMVOL_COLOR_RED = 16
  MMVOL_COLOR_PINK = 17
  MMVOL_COLOR_PLUM = 18
  MMVOL_COLOR_MAGENTA = 19
  MMVOL_COLOR_BLUE_VIOLET = 20
  MMVOL_COLOR_WHITE = 21
  MMVOL_COLOR_CYAN = 22
  MMVOL_COLOR_HIGHEST_ENUM = 22
  MMVOL_HINT_SURFACE_TRANSPARENCY = 0
hash(x)
  mmvol_initialize = _mmsurf.mmvol_initialize
  mmvol_terminate = _mmsurf.mmvol_terminate
  mmvol_refcount = _mmsurf.mmvol_refcount
  mmvol_errhandler = _mmsurf.mmvol_errhandler
  mmvol_new = _mmsurf.mmvol_new
  mmvol_delete = _mmsurf.mmvol_delete
  mmvol_copy = _mmsurf.mmvol_copy
  mmvol_in_use = _mmsurf.mmvol_in_use
  mmvol_get_total = _mmsurf.mmvol_get_total
  mmvol_get_by_index = _mmsurf.mmvol_get_by_index
  mmvol_get_name = _mmsurf.mmvol_get_name
  mmvol_set_name = _mmsurf.mmvol_set_name
  mmvol_get_grid_type = _mmsurf.mmvol_get_grid_type
  mmvol_set_grid_type = _mmsurf.mmvol_set_grid_type
  mmvol_get_data_type = _mmsurf.mmvol_get_data_type
  mmvol_set_data_type = _mmsurf.mmvol_set_data_type
  mmvol_get_property_name = _mmsurf.mmvol_get_property_name
  mmvol_set_property_name = _mmsurf.mmvol_set_property_name
  mmvol_get_author_name = _mmsurf.mmvol_get_author_name
  mmvol_set_author_name = _mmsurf.mmvol_set_author_name
  mmvol_get_ccp4_data = _mmsurf.mmvol_get_ccp4_data
  mmvol_set_ccp4_data = _mmsurf.mmvol_set_ccp4_data
  mmvol_get_comment = _mmsurf.mmvol_get_comment
  mmvol_set_comment = _mmsurf.mmvol_set_comment
  mmvol_get_num_dimensions = _mmsurf.mmvol_get_num_dimensions
  mmvol_set_num_dimensions = _mmsurf.mmvol_set_num_dimensions
  mmvol_get_origin_array = _mmsurf.mmvol_get_origin_array
  mmvol_set_origin = _mmsurf.mmvol_set_origin
  mmvol_get_orientation_array = _mmsurf.mmvol_get_orientation_array
  mmvol_set_orientation = _mmsurf.mmvol_set_orientation
  mmvol_get_num_components = _mmsurf.mmvol_get_num_components
  mmvol_set_num_components = _mmsurf.mmvol_set_num_components
  mmvol_get_dimensions_array = _mmsurf.mmvol_get_dimensions_array
  mmvol_set_dimensions = _mmsurf.mmvol_set_dimensions
  mmvol_get_axis_scales_array = _mmsurf.mmvol_get_axis_scales_array
  mmvol_set_axis_scales = _mmsurf.mmvol_set_axis_scales
  mmvol_get_axis_length = _mmsurf.mmvol_get_axis_length
  mmvol_get_sample_locations = _mmsurf.mmvol_get_sample_locations
  mmvol_has_sample_range = _mmsurf.mmvol_has_sample_range
  mmvol_get_grid_sample_range = _mmsurf.mmvol_get_grid_sample_range
  mmvol_get_grid_sample = _mmsurf.mmvol_get_grid_sample
  mmvol_set_grid_sample = _mmsurf.mmvol_set_grid_sample
  mmvol_get_num_contour_hints = _mmsurf.mmvol_get_num_contour_hints
  mmvol_set_contour_hints = _mmsurf.mmvol_set_contour_hints
  mmvol_get_default_surf_visibility = _mmsurf.mmvol_get_default_...
  mmvol_set_default_surf_visibility = _mmsurf.mmvol_set_default_...
  mmvol_get_has_sample_range = _mmsurf.mmvol_get_has_sample_range
  mmvol_set_has_sample_range = _mmsurf.mmvol_set_has_sample_range
  mmvol_get_min_sample_value = _mmsurf.mmvol_get_min_sample_value
  mmvol_set_min_sample_value = _mmsurf.mmvol_set_min_sample_value
  mmvol_get_max_sample_value = _mmsurf.mmvol_get_max_sample_value
  mmvol_set_max_sample_value = _mmsurf.mmvol_set_max_sample_value
  mmvol_has_grid_samples = _mmsurf.mmvol_has_grid_samples
  mmvol_get_first_slice = _mmsurf.mmvol_get_first_slice
  mmvol_get_next_slice = _mmsurf.mmvol_get_next_slice
  mmvol_attach_slice = _mmsurf.mmvol_attach_slice
  mmvol_get_unit_cell_is_oblique = _mmsurf.mmvol_get_unit_cell_i...
  mmvol_set_unit_cell_is_oblique = _mmsurf.mmvol_set_unit_cell_i...
  mmvol_get_unit_cell_abc = _mmsurf.mmvol_get_unit_cell_abc
  mmvol_set_unit_cell_abc = _mmsurf.mmvol_set_unit_cell_abc
  mmvol_get_unit_cell_angle = _mmsurf.mmvol_get_unit_cell_angle
  mmvol_set_unit_cell_angle = _mmsurf.mmvol_set_unit_cell_angle
  mmvol_get_unit_cell_dims = _mmsurf.mmvol_get_unit_cell_dims
  mmvol_set_unit_cell_dims = _mmsurf.mmvol_set_unit_cell_dims
  mmvol_get_sigma = _mmsurf.mmvol_get_sigma
  mmvol_set_sigma = _mmsurf.mmvol_set_sigma
  mmvol_regularize = _mmsurf.mmvol_regularize
  mmvol_new_slice = _mmsurf.mmvol_new_slice
  mmvol_get_rgb_for_colorenum = _mmsurf.mmvol_get_rgb_for_colorenum
  mmvol_set_rgb_for_colorenum = _mmsurf.mmvol_set_rgb_for_colorenum
  mmvol_trilinear_interpolate = _mmsurf.mmvol_trilinear_interpolate
  mmvol_hint_set_real = _mmsurf.mmvol_hint_set_real
  mmvol_hint_get_real = _mmsurf.mmvol_hint_get_real
  mmvol_get_color_map = _mmsurf.mmvol_get_color_map
  mmvol_set_color_map = _mmsurf.mmvol_set_color_map
  mmvol_get_visible = _mmsurf.mmvol_get_visible
  mmvol_set_visible = _mmsurf.mmvol_set_visible
  MMSURF_RGB_COLOR_SIZE = 3
hash(x)
  MMSURF_FATAL = -3
  MMSURF_ERROR = -2
  MMSURF_WARNING = -1
  MMSURF_OK = 0
hash(x)
  MMSURF_STYLE_SOLID = 0
hash(x)
  MMSURF_STYLE_MESH = 1
  MMSURF_STYLE_DOT = 2
  MMSURF_TRANSPARENCY_FRONT_AND_BACK = 0
hash(x)
  MMSURF_TRANSPARENCY_FRONT = 1
  MMSURF_TRANSPARENCY_BACK = 2
  MMSURF_COLOR_FROM_SURFACE = 0
hash(x)
  MMSURF_COLOR_FROM_VERTEX = 1
  MMSURF_COLOR_FROM_NEAREST_ASL_ATOM = 2
  MMSURF_COLOR_FROM_VOLUME = 3
hash(x)
  MMSURF_COLOR_FROM_ENTRY = 4
  MMSURF_CNS_MAP_TYPE_NONE = -1
  MMSURF_CNS_MAP_TYPE_FO = 0
hash(x)
  MMSURF_CNS_MAP_TYPE_FOFC = 1
  MMSURF_CNS_MAP_TYPE_2FOFC = 2
  MMSURF_CNS_MAP_TYPE_3FO2FC = 3
hash(x)
  MMSURF_CNS_MAP_TYPE_OTHERS = 4
  MMSURF_CNS_MAP_TYPE_CCP4 = 5
  MMSURF_CNS_MAP_TYPE_COMMENT_REGULAR = 0
hash(x)
  MMSURF_CNS_MAP_TYPE_COMMENT_OMIT = 1
  MMSURF_CNS_MAP_TYPE_COMMENT_COMPOSITEOMIT = 2
  MMSURF_CNS_MAP_TYPE_COMMENT_CCP4 = 3
hash(x)
  MMSURF_UPDATE_ISOVALUE = 1
  MMSURF_UPDATE_ISOVALUE_INCREASE_DECREASE = 2
  MMSURF_UPDATE_GRID_CENTER_AND_SIZE = 3
hash(x)
  MMSURF_UPDATE_GRID_CENTER_KEEP = 4
  MOLSURF_ERR = 0
hash(x)
  MOLSURF_OK = 1
  MOLSURF_WARNING = 2
  MOLSURF_VDW = 0
hash(x)
  MOLSURF_EXTENDED = 1
  MOLSURF_MOLECULAR = 2
  MMSURF_COLOR_BY_SOURCE_COLOR = 'Color'
  MMSURF_COLOR_BY_PARTIAL_CHARGE = 'Atom Partial Charge'
  MMSURF_COLOR_BY_ATOM_TYPE = 'Atom Type'
  MMSURF_COLOR_BY_ATOM_TYPE_MM = 'Atom Type (MacroModel)'
  MMSURF_COLOR_BY_CHAIN_NAME = 'Chain Name'
  MMSURF_COLOR_BY_ELEMENT = 'Element'
  MMSURF_COLOR_BY_MOL_NUMBER = 'Molecule Number'
  MMSURF_COLOR_BY_MOL_NUMBER_CARBON = 'Element (Molecule Number ...
  MMSURF_COLOR_BY_RESIDUE_CHARGE = 'Residue Charge'
  MMSURF_COLOR_BY_RESIDUE_HYDROPHOBICITY = 'Residue Hydrophobicity'
  MMSURF_COLOR_BY_RESIDUE_POSITION = 'Residue Position'
  MMSURF_COLOR_BY_RESIDUE_TYPE = 'Residue Type'
  MMSURF_COLOR_BY_GRID_PROPERTY = 'Grid Property'
  MMSURF_COLOR_BY_ATOM_COLOR = 'Atom Color'
  MMSURF_COLOR_BY_CAVITY_DEPTH = 'Cavity Depth'
  MMSURF_COLOR_RAMP_REDWHITEBLUE = 'redwhiteblue'
  MMSURF_COLOR_RAMP_WHITEBLUE = 'whiteblue'
  MMSURF_COLOR_RAMP_WHITERED = 'whitered'
  MMSURF_COLOR_RAMP_RAINBOW = 'rainbow'
  MMSURF_INVALID_SURFACE = 0
hash(x)
  mmsurf_initialize = _mmsurf.mmsurf_initialize
  mmsurf_terminate = _mmsurf.mmsurf_terminate
  mmsurf_new = _mmsurf.mmsurf_new
  mmsurf_delete = _mmsurf.mmsurf_delete
  mmsurf_copy = _mmsurf.mmsurf_copy
  mmsurf_in_use = _mmsurf.mmsurf_in_use
  mmsurf_get_total = _mmsurf.mmsurf_get_total
  mmsurf_get_by_index = _mmsurf.mmsurf_get_by_index
  mmsurf_refcount = _mmsurf.mmsurf_refcount
  mmsurf_errhandler = _mmsurf.mmsurf_errhandler
  mmsurf_get_name = _mmsurf.mmsurf_get_name
  mmsurf_set_name = _mmsurf.mmsurf_set_name
  mmsurf_get_volume_name = _mmsurf.mmsurf_get_volume_name
  mmsurf_set_volume_name = _mmsurf.mmsurf_set_volume_name
  mmsurf_get_surface_type = _mmsurf.mmsurf_get_surface_type
  mmsurf_set_surface_type = _mmsurf.mmsurf_set_surface_type
  mmsurf_get_comment = _mmsurf.mmsurf_get_comment
  mmsurf_set_comment = _mmsurf.mmsurf_set_comment
  mmsurf_get_view_by_asl = _mmsurf.mmsurf_get_view_by_asl
  mmsurf_set_view_by_asl = _mmsurf.mmsurf_set_view_by_asl
  mmsurf_get_viewing_distance = _mmsurf.mmsurf_get_viewing_distance
  mmsurf_set_viewing_distance = _mmsurf.mmsurf_set_viewing_distance
  mmsurf_get_isovalue = _mmsurf.mmsurf_get_isovalue
  mmsurf_set_isovalue = _mmsurf.mmsurf_set_isovalue
  mmsurf_get_surface_area = _mmsurf.mmsurf_get_surface_area
  mmsurf_set_surface_area = _mmsurf.mmsurf_set_surface_area
  mmsurf_calculate_surface_area = _mmsurf.mmsurf_calculate_surfa...
  mmsurf_get_bounding_box = _mmsurf.mmsurf_get_bounding_box
  mmsurf_set_bounding_box = _mmsurf.mmsurf_set_bounding_box
  mmsurf_get_num_vertices = _mmsurf.mmsurf_get_num_vertices
  mmsurf_set_num_vertices = _mmsurf.mmsurf_set_num_vertices
  mmsurf_set_is_full = _mmsurf.mmsurf_set_is_full
  mmsurf_has_patches = _mmsurf.mmsurf_has_patches
  mmsurf_get_num_patches = _mmsurf.mmsurf_get_num_patches
  mmsurf_set_num_patches = _mmsurf.mmsurf_set_num_patches
  mmsurf_get_num_isoline_patches = _mmsurf.mmsurf_get_num_isolin...
  mmsurf_set_num_isoline_patches = _mmsurf.mmsurf_set_num_isolin...
  mmsurf_get_num_lines = _mmsurf.mmsurf_get_num_lines
  mmsurf_set_num_lines = _mmsurf.mmsurf_set_num_lines
  mmsurf_set_vertex_coord = _mmsurf.mmsurf_set_vertex_coord
  mmsurf_get_transformed_vertex_coord = _mmsurf.mmsurf_get_trans...
  mmsurf_get_transformed_isoline_vertex_coord = _mmsurf.mmsurf_g...
  mmsurf_get_patch_vertices = _mmsurf.mmsurf_get_patch_vertices
  mmsurf_set_vertex_normal = _mmsurf.mmsurf_set_vertex_normal
  mmsurf_reset_xform = _mmsurf.mmsurf_reset_xform
  mmsurf_get_has_nearest_atoms = _mmsurf.mmsurf_get_has_nearest_...
  mmsurf_set_nearest_atoms = _mmsurf.mmsurf_set_nearest_atoms
  mmsurf_set_reduction_factor = _mmsurf.mmsurf_set_reduction_factor
  mmsurf_get_reduction_factor = _mmsurf.mmsurf_get_reduction_factor
  mmsurf_copy_graphics = _mmsurf.mmsurf_copy_graphics
  mmsurf_get_visibility = _mmsurf.mmsurf_get_visibility
  mmsurf_set_visibility = _mmsurf.mmsurf_set_visibility
  mmsurf_get_style = _mmsurf.mmsurf_get_style
  mmsurf_set_style = _mmsurf.mmsurf_set_style
  mmsurf_get_darken_colors_by_cavity_depth = _mmsurf.mmsurf_get_...
  mmsurf_set_darken_colors_by_cavity_depth = _mmsurf.mmsurf_set_...
  mmsurf_get_color = _mmsurf.mmsurf_get_color
  mmsurf_set_color = _mmsurf.mmsurf_set_color
  mmsurf_get_rgb_color = _mmsurf.mmsurf_get_rgb_color
  mmsurf_set_rgb_color = _mmsurf.mmsurf_set_rgb_color
  mmsurf_get_transparency = _mmsurf.mmsurf_get_transparency
  mmsurf_set_transparency = _mmsurf.mmsurf_set_transparency
  mmsurf_get_transparency_back = _mmsurf.mmsurf_get_transparency...
  mmsurf_set_transparency_back = _mmsurf.mmsurf_set_transparency...
  mmsurf_get_color_source = _mmsurf.mmsurf_get_color_source
  mmsurf_set_color_source = _mmsurf.mmsurf_set_color_source
  mmsurf_get_color_source_id = _mmsurf.mmsurf_get_color_source_id
  mmsurf_set_color_source_id = _mmsurf.mmsurf_set_color_source_id
  mmsurf_get_color_scheme = _mmsurf.mmsurf_get_color_scheme
  mmsurf_set_color_scheme = _mmsurf.mmsurf_set_color_scheme
  mmsurf_get_scheme_volume_name = _mmsurf.mmsurf_get_scheme_volu...
  mmsurf_set_scheme_volume_name = _mmsurf.mmsurf_set_scheme_volu...
  mmsurf_get_asl = _mmsurf.mmsurf_get_asl
  mmsurf_set_asl = _mmsurf.mmsurf_set_asl
  mmsurf_get_use_view_by = _mmsurf.mmsurf_get_use_view_by
  mmsurf_set_use_view_by = _mmsurf.mmsurf_set_use_view_by
  mmsurf_empty_surface = _mmsurf.mmsurf_empty_surface
  mmsurf_get_colorramp_name = _mmsurf.mmsurf_get_colorramp_name
  mmsurf_set_colorramp_name = _mmsurf.mmsurf_set_colorramp_name
  mmsurf_set_show_legend = _mmsurf.mmsurf_set_show_legend
  mmsurf_get_map_min = _mmsurf.mmsurf_get_map_min
  mmsurf_set_map_min = _mmsurf.mmsurf_set_map_min
  mmsurf_get_map_max = _mmsurf.mmsurf_get_map_max
  mmsurf_set_map_max = _mmsurf.mmsurf_set_map_max
  mmsurf_get_volume_map_min = _mmsurf.mmsurf_get_volume_map_min
  mmsurf_set_volume_map_min = _mmsurf.mmsurf_set_volume_map_min
  mmsurf_get_volume_map_max = _mmsurf.mmsurf_get_volume_map_max
  mmsurf_set_volume_map_max = _mmsurf.mmsurf_set_volume_map_max
  mmsurf_get_esp_colorramp_name = _mmsurf.mmsurf_get_esp_colorra...
  mmsurf_set_esp_colorramp_name = _mmsurf.mmsurf_set_esp_colorra...
  mmsurf_get_esp_min = _mmsurf.mmsurf_get_esp_min
  mmsurf_set_esp_min = _mmsurf.mmsurf_set_esp_min
  mmsurf_get_esp_max = _mmsurf.mmsurf_get_esp_max
  mmsurf_set_esp_max = _mmsurf.mmsurf_set_esp_max
  mmsurf_get_num_isoline_vertices = _mmsurf.mmsurf_get_num_isoli...
  mmsurf_set_num_isoline_vertices = _mmsurf.mmsurf_set_num_isoli...
  mmsurf_set_gen_isolines = _mmsurf.mmsurf_set_gen_isolines
  mmsurf_get_gen_isolines = _mmsurf.mmsurf_get_gen_isolines
  mmsurf_get_has_isoline_nearest_atoms = _mmsurf.mmsurf_get_has_...
  mmsurf_clear_esp_array = _mmsurf.mmsurf_clear_esp_array
  mmsurf_get_has_esp_array = _mmsurf.mmsurf_get_has_esp_array
  mmsurf_set_has_esp_array = _mmsurf.mmsurf_set_has_esp_array
  mmsurf_get_has_isoline_esp_array = _mmsurf.mmsurf_get_has_isol...
  mmsurf_set_has_isoline_esp_array = _mmsurf.mmsurf_set_has_isol...
  mmsurf_get_smooth = _mmsurf.mmsurf_get_smooth
  mmsurf_set_smooth = _mmsurf.mmsurf_set_smooth
  mmsurf_set_use_active_grid = _mmsurf.mmsurf_set_use_active_grid
  mmsurf_get_active_grid_size = _mmsurf.mmsurf_get_active_grid_size
  mmsurf_set_active_grid_size = _mmsurf.mmsurf_set_active_grid_size
  mmsurf_get_active_grid_center = _mmsurf.mmsurf_get_active_grid...
  mmsurf_set_active_grid_center = _mmsurf.mmsurf_set_active_grid...
  mmsurf_debug_isosurface = _mmsurf.mmsurf_debug_isosurface
  mmsurf_new_isosurface = _mmsurf.mmsurf_new_isosurface
  mmsurf_update_isosurface = _mmsurf.mmsurf_update_isosurface
  mmsurf_update_molecular_isolines = _mmsurf.mmsurf_update_molec...
  mmsurf_set_blob_progress_callback = _mmsurf.mmsurf_set_blob_pr...
  mmsurf_get_blobs = _mmsurf.mmsurf_get_blobs
  mmsurf_find_blobs = _mmsurf.mmsurf_find_blobs
  mmsurf_triangulate_points = _mmsurf.mmsurf_triangulate_points
  mmsurf_patch_surface = _mmsurf.mmsurf_patch_surface
  mmsurf_molsurf = _mmsurf.mmsurf_molsurf
  Null = object()
  _failure_dict = {}
  _ignored_functions = set(['mmsurf_get_is_full', 'mmsurf_get_ne...
  _return_code_lists = [['MMVISIO_SMAP_NO_FILE', 'MMVISIO_SMAP_B...
  return_codes = mmcheck.generate_return_code_dict(globals(), _r...
  cvar = <Swig global variables>
  __package__ = 'schrodinger.infra'
Variables Details [hide private]

cout

Value:
<schrodinger.infra.mmsurf.ostream; proxy of <Swig Object of type 'std:\
:ostream *' at 0x2b21a6115cc0> >

cerr

Value:
<schrodinger.infra.mmsurf.ostream; proxy of <Swig Object of type 'std:\
:ostream *' at 0x2b21a6115d20> >

mmvisio_read_volume_from_file

Value:
_mmsurf.mmvisio_read_volume_from_file

mmvisio_read_surface_from_file

Value:
_mmsurf.mmvisio_read_surface_from_file

mmvisio_write_volume_to_file

Value:
_mmsurf.mmvisio_write_volume_to_file

mmvisio_write_surface_to_file

Value:
_mmsurf.mmvisio_write_surface_to_file

mmvisio_read_dataset_category

Value:
_mmsurf.mmvisio_read_dataset_category

mmvisio_read_volume_fulldata

Value:
_mmsurf.mmvisio_read_volume_fulldata

mmvisio_write_volume_fulldata

Value:
_mmsurf.mmvisio_write_volume_fulldata

mmvisio_read_volume_hyperslab

Value:
_mmsurf.mmvisio_read_volume_hyperslab

mmvisio_write_volume_hyperslab

Value:
_mmsurf.mmvisio_write_volume_hyperslab

mmvisio_read_volume_grid_type

Value:
_mmsurf.mmvisio_read_volume_grid_type

mmvisio_write_volume_grid_type

Value:
_mmsurf.mmvisio_write_volume_grid_type

mmvisio_read_volume_data_type

Value:
_mmsurf.mmvisio_read_volume_data_type

mmvisio_write_volume_data_type

Value:
_mmsurf.mmvisio_write_volume_data_type

mmvisio_read_volume_property_name

Value:
_mmsurf.mmvisio_read_volume_property_name

mmvisio_write_volume_property_name

Value:
_mmsurf.mmvisio_write_volume_property_name

mmvisio_read_volume_author_name

Value:
_mmsurf.mmvisio_read_volume_author_name

mmvisio_write_volume_author_name

Value:
_mmsurf.mmvisio_write_volume_author_name

mmvisio_read_volume_ccp4_data

Value:
_mmsurf.mmvisio_read_volume_ccp4_data

mmvisio_write_volume_ccp4_data

Value:
_mmsurf.mmvisio_write_volume_ccp4_data

mmvisio_write_volume_comment

Value:
_mmsurf.mmvisio_write_volume_comment

mmvisio_read_volume_num_dimensions

Value:
_mmsurf.mmvisio_read_volume_num_dimensions

mmvisio_write_volume_num_dimensions

Value:
_mmsurf.mmvisio_write_volume_num_dimensions

mmvisio_read_volume_orientation

Value:
_mmsurf.mmvisio_read_volume_orientation

mmvisio_write_volume_orientation

Value:
_mmsurf.mmvisio_write_volume_orientation

mmvisio_read_volume_num_components

Value:
_mmsurf.mmvisio_read_volume_num_components

mmvisio_write_volume_num_components

Value:
_mmsurf.mmvisio_write_volume_num_components

mmvisio_read_volume_dimensions

Value:
_mmsurf.mmvisio_read_volume_dimensions

mmvisio_write_volume_dimensions

Value:
_mmsurf.mmvisio_write_volume_dimensions

mmvisio_read_volume_axis_scales

Value:
_mmsurf.mmvisio_read_volume_axis_scales

mmvisio_write_volume_axis_scales

Value:
_mmsurf.mmvisio_write_volume_axis_scales

mmvisio_read_volume_sampling_locations

Value:
_mmsurf.mmvisio_read_volume_sampling_locations

mmvisio_write_volume_sampling_locations

Value:
_mmsurf.mmvisio_write_volume_sampling_locations

mmvisio_read_volume_unit_cell_is_oblique

Value:
_mmsurf.mmvisio_read_volume_unit_cell_is_oblique

mmvisio_write_volume_unit_cell_is_oblique

Value:
_mmsurf.mmvisio_write_volume_unit_cell_is_oblique

mmvisio_read_volume_unit_cell_abc

Value:
_mmsurf.mmvisio_read_volume_unit_cell_abc

mmvisio_write_volume_unit_cell_abc

Value:
_mmsurf.mmvisio_write_volume_unit_cell_abc

mmvisio_read_volume_unit_cell_angle

Value:
_mmsurf.mmvisio_read_volume_unit_cell_angle

mmvisio_write_volume_unit_cell_angle

Value:
_mmsurf.mmvisio_write_volume_unit_cell_angle

mmvisio_read_volume_unit_cell_dims

Value:
_mmsurf.mmvisio_read_volume_unit_cell_dims

mmvisio_write_volume_unit_cell_dims

Value:
_mmsurf.mmvisio_write_volume_unit_cell_dims

mmvisio_read_surface_isovalue

Value:
_mmsurf.mmvisio_read_surface_isovalue

mmvisio_read_surface_boundingbox

Value:
_mmsurf.mmvisio_read_surface_boundingbox

mmvisio_read_surface_num_vertices

Value:
_mmsurf.mmvisio_read_surface_num_vertices

mmvisio_read_surface_num_patches

Value:
_mmsurf.mmvisio_read_surface_num_patches

mmvisio_read_surface_num_isoline_patches

Value:
_mmsurf.mmvisio_read_surface_num_isoline_patches

mmvisio_read_surface_num_lines

Value:
_mmsurf.mmvisio_read_surface_num_lines

mmvisio_read_surface_colorramp_name

Value:
_mmsurf.mmvisio_read_surface_colorramp_name

mmvisio_read_surface_show_legend

Value:
_mmsurf.mmvisio_read_surface_show_legend

mmvisio_read_surface_map_min

Value:
_mmsurf.mmvisio_read_surface_map_min

mmvisio_read_surface_map_max

Value:
_mmsurf.mmvisio_read_surface_map_max

mmvisio_read_surface_esp_colorramp_name

Value:
_mmsurf.mmvisio_read_surface_esp_colorramp_name

mmvisio_read_surface_esp_min

Value:
_mmsurf.mmvisio_read_surface_esp_min

mmvisio_read_surface_esp_max

Value:
_mmsurf.mmvisio_read_surface_esp_max

mmvisio_read_surface_num_isoline_vertices

Value:
_mmsurf.mmvisio_read_surface_num_isoline_vertices

mmvisio_read_surface_use_active_grid

Value:
_mmsurf.mmvisio_read_surface_use_active_grid

mmvisio_write_surface_use_active_grid

Value:
_mmsurf.mmvisio_write_surface_use_active_grid

mmvisio_read_surface_active_grid_size

Value:
_mmsurf.mmvisio_read_surface_active_grid_size

mmvisio_write_surface_active_grid_size

Value:
_mmsurf.mmvisio_write_surface_active_grid_size

mmvisio_read_surface_active_grid_center

Value:
_mmsurf.mmvisio_read_surface_active_grid_center

mmvisio_write_surface_active_grid_center

Value:
_mmsurf.mmvisio_write_surface_active_grid_center

mmvisio_is_surface_style_defined

Value:
_mmsurf.mmvisio_is_surface_style_defined

mmsurf_get_all_vertex_coords

Value:
_mmsurf.mmsurf_get_all_vertex_coords

mmsurf_get_all_vertex_normals

Value:
_mmsurf.mmsurf_get_all_vertex_normals

mmsurf_get_all_vertex_colors

Value:
_mmsurf.mmsurf_get_all_vertex_colors

mmsurf_set_all_vertex_colors

Value:
_mmsurf.mmsurf_set_all_vertex_colors

mmvol_get_default_surf_visibility

Value:
_mmsurf.mmvol_get_default_surf_visibility

mmvol_set_default_surf_visibility

Value:
_mmsurf.mmvol_set_default_surf_visibility

mmvol_get_unit_cell_is_oblique

Value:
_mmsurf.mmvol_get_unit_cell_is_oblique

mmvol_set_unit_cell_is_oblique

Value:
_mmsurf.mmvol_set_unit_cell_is_oblique

MMSURF_COLOR_BY_MOL_NUMBER_CARBON

Value:
'Element (Molecule Number Carbons)'

mmsurf_calculate_surface_area

Value:
_mmsurf.mmsurf_calculate_surface_area

mmsurf_get_num_isoline_patches

Value:
_mmsurf.mmsurf_get_num_isoline_patches

mmsurf_set_num_isoline_patches

Value:
_mmsurf.mmsurf_set_num_isoline_patches

mmsurf_get_transformed_vertex_coord

Value:
_mmsurf.mmsurf_get_transformed_vertex_coord

mmsurf_get_transformed_isoline_vertex_coord

Value:
_mmsurf.mmsurf_get_transformed_isoline_vertex_coord

mmsurf_get_has_nearest_atoms

Value:
_mmsurf.mmsurf_get_has_nearest_atoms

mmsurf_get_darken_colors_by_cavity_depth

Value:
_mmsurf.mmsurf_get_darken_colors_by_cavity_depth

mmsurf_set_darken_colors_by_cavity_depth

Value:
_mmsurf.mmsurf_set_darken_colors_by_cavity_depth

mmsurf_get_transparency_back

Value:
_mmsurf.mmsurf_get_transparency_back

mmsurf_set_transparency_back

Value:
_mmsurf.mmsurf_set_transparency_back

mmsurf_get_scheme_volume_name

Value:
_mmsurf.mmsurf_get_scheme_volume_name

mmsurf_set_scheme_volume_name

Value:
_mmsurf.mmsurf_set_scheme_volume_name

mmsurf_get_esp_colorramp_name

Value:
_mmsurf.mmsurf_get_esp_colorramp_name

mmsurf_set_esp_colorramp_name

Value:
_mmsurf.mmsurf_set_esp_colorramp_name

mmsurf_get_num_isoline_vertices

Value:
_mmsurf.mmsurf_get_num_isoline_vertices

mmsurf_set_num_isoline_vertices

Value:
_mmsurf.mmsurf_set_num_isoline_vertices

mmsurf_get_has_isoline_nearest_atoms

Value:
_mmsurf.mmsurf_get_has_isoline_nearest_atoms

mmsurf_get_has_isoline_esp_array

Value:
_mmsurf.mmsurf_get_has_isoline_esp_array

mmsurf_set_has_isoline_esp_array

Value:
_mmsurf.mmsurf_set_has_isoline_esp_array

mmsurf_get_active_grid_center

Value:
_mmsurf.mmsurf_get_active_grid_center

mmsurf_set_active_grid_center

Value:
_mmsurf.mmsurf_set_active_grid_center

mmsurf_update_molecular_isolines

Value:
_mmsurf.mmsurf_update_molecular_isolines

mmsurf_set_blob_progress_callback

Value:
_mmsurf.mmsurf_set_blob_progress_callback

_ignored_functions

Value:
set(['mmsurf_get_is_full',
     'mmsurf_get_nearest_atoms',
     'mmsurf_get_show_legend',
     'mmsurf_get_use_active_grid',
     'mmsurf_get_vertex_coord',
     'mmsurf_get_vertex_normal',
     'mmsurf_has_vertex_colors'])

_return_code_lists

Value:
[['MMVISIO_SMAP_NO_FILE',
  'MMVISIO_SMAP_BAD_FORMAT',
  'MMVISIO_SMAP_BAD_DATA',
  'MMVISIO_FATAL',
  'MMVISIO_ERROR',
  'MMVISIO_WARNING',
  'MMVISIO_OK'],
 ['MMSURF_FATAL', 'MMSURF_ERROR', 'MMSURF_WARNING', 'MMSURF_OK'],
...

return_codes

Value:
mmcheck.generate_return_code_dict(globals(), _return_code_lists)