schrodinger.infra.phase

Module phase

Phase C++ wrappers

Classes

[hide private]

SwigPyIterator
Proxy of C++ swig::SwigPyIterator class

SwigIntVector
Proxy of C++ std::vector<(int)> class

SwigUnsignedIntVector
Proxy of C++ std::vector<(unsigned int)> class

SwigStringVector
Proxy of C++ std::vector<(std::string)> class

SwigDoubleVector
Proxy of C++ std::vector<(double)> class

SwigUInt64Vector
Proxy of C++ std::vector<(uint64,std::allocator<(uint64)>)> class

SwigIntIntPair
Proxy of C++ std::pair<(int,int)> class

SwigVectorIntIntPair
Proxy of C++ std::vector<(std::pair<(int,int)>)> class

SwigUnsignedIntVector2
Proxy of C++ std::vector<(std::vector<(unsigned int)>)> class

SwigDoubleVector3
Proxy of C++ std::vector<(std::vector<(std::vector<(double)>)>)> class

ostream
Proxy of C++ std::ostream class

ofstream
Proxy of C++ std::ofstream class

istream
Proxy of C++ std::istream class

ifstream
Proxy of C++ std::ifstream class

TemporaryOFStream
A subclass of ofstream that uses the tempfile module to get a temporary filename and automatically deletes itself at garbage collection.

PhpSite
Proxy of C++ PhpSite class

PhpFeaturePattern
Proxy of C++ PhpFeaturePattern class

PhpFeatureDefinition
Proxy of C++ PhpFeatureDefinition class

PhpFeatureData
Proxy of C++ PhpFeatureData class

PhpException
Proxy of C++ PhpException class

PhpIntCoord
Proxy of C++ PhpIntCoord_ class

PhpAlignCore
Proxy of C++ PhpAlignCore class

PhpProject
Proxy of C++ PhpProject class

PhpFastShapePair
Proxy of C++ PhpFastShapePair_ class

PhpFastShape
Proxy of C++ PhpFastShape class

PhpComplex
Proxy of C++ PhpComplex class

PhpDeltaHypoSite
Proxy of C++ PhpDeltaHypoSite_ class

PhpDeltaHypo
Proxy of C++ PhpDeltaHypo class

PhpExclVolSphere
Proxy of C++ PhpExclVolSphere_ class

PhpExclVol
Proxy of C++ PhpExclVol class

PhpFeatureRules
Proxy of C++ PhpFeatureRules class

PhpAtomClassDescriptions
Proxy of C++ PhpAtomClassDescriptions class

PhpFeatureClassDescriptions
Proxy of C++ PhpFeatureClassDescriptions class

PhpQSARModel
Proxy of C++ PhpQSARModel_ class

PhpVolCoords
Proxy of C++ PhpVolCoords_ class

PhpQSAR
Proxy of C++ PhpQSAR class

PhpSiteConstraint
Proxy of C++ PhpSiteConstraint_ class

PhpSiteConstrainer
Proxy of C++ PhpSiteConstrainer class

PhpSiteMaskData
Proxy of C++ PhpSiteMaskData_ class

PhpSiteMaskGroup
Proxy of C++ PhpSiteMaskGroup_ class

PhpSiteMask
Proxy of C++ PhpSiteMask class

PhpHypoAdaptor
Proxy of C++ PhpHypoAdaptor class

Functions

[hide private]

_swig_setattr_nondynamic(self, class_type, name, value, static=1)

_swig_setattr(self, class_type, name, value)

_swig_getattr(self, class_type, name)

_swig_repr(self)
repr(x)

_swig_setattr_nondynamic_method(set)

ostream

_get_cout()

ostream

_get_cerr()

std::string

getDefaultFdFileBaseName()

std::string

getDefaultFdFilePath()

getLongLine(*args, **kwargs)
getLongLine(istream istr, std::string & s) -> istream

tokenizeDelimitedString(*args, **kwargs)
tokenizeDelimitedString(std::string const & s, char sep=',') -> SwigStringVector

PhpSiteMask_resolveMaskValue(*args, **kwargs)
PhpSiteMask_resolveMaskValue(int maskValue, size_t & groupNumber, size_t & minMatch)

PhpSiteMask_resolveMatchLimits(*args, **kwargs)
PhpSiteMask_resolveMatchLimits(SwigIntVector siteMask, size_t & minSites, size_t & maxSites)

Variables

[hide private]

_newclass = 1

cout = <schrodinger.infra.phase.ostream; proxy of <Swig Object...

cerr = <schrodinger.infra.phase.ostream; proxy of <Swig Object...

cvar = <Swig global variables>

PHASE_MAX_HITS_MEMORY = 100000

PhpQSARSuccess = 0
hash(x)

PhpQSARGridError = 1

PhpQSAROutOfMemory = 2

PhpQSARBadActData = 3
hash(x)

PhpQSARFileNotFound = 4

PhpQSARReadError = 5

PhpQSAROutputError = 6

PhpQSARmmlibsError = 7

PhpQSARWrongModelType = 8

PhpQSARBadVolOccBits = 9

PhpQSARNoXVar = 10

PhpQSARUnknownError = 11

__package__ = 'schrodinger.infra'

Variables Details

[hide private]

cout

Value:

<schrodinger.infra.phase.ostream; proxy of <Swig Object of type 'std::
ostream *' at 0x2b21b4773150> >

cerr

Value:

<schrodinger.infra.phase.ostream; proxy of <Swig Object of type 'std::
ostream *' at 0x2b21b4a00b10> >