Package schrodinger :: Package protein :: Module helix

Module helix

Module for converting residue sequences to 3D structures with an a-helix secondary structure.

Functions

get_fragment_structure(fragname)

grow_fragment(st, fromatom, toatom, fraggroup, fragname, direction=None)
Grow the given fragment to the given ct, in alpha-helix configuration.

process_sequence(line)

Variables

[hide private]

__doc__ = ...

_pdb_codes = [('A', 'ALA'), ('C', 'CYS'), ('D', 'ASP'), ('E', ...

_pdb_lookup = {'A': 'ALA', 'C': 'CYS', 'D': 'ASP', 'E': 'GLU',...

__package__ = 'schrodinger.protein'

Variables Details

[hide private]

doc

Value:

"""

Module for converting residue sequences to 3D structures with an a-hel
ix secondary
structure.

Copyright Schrodinger, LLC. All rights reserved.
"""

_pdb_codes

Value:

[('A', 'ALA'),
 ('C', 'CYS'),
 ('D', 'ASP'),
 ('E', 'GLU'),
 ('F', 'PHE'),
 ('G', 'GLY'),
 ('H', 'HIS'),
 ('I', 'ILE'),
...

_pdb_lookup

Value:

{'A': 'ALA',
 'C': 'CYS',
 'D': 'ASP',
 'E': 'GLU',
 'F': 'PHE',
 'G': 'GLY',
 'H': 'HIS',
 'I': 'ILE',
...