Package schrodinger :: Package application :: Package bioluminate :: Module pml_menus :: Class InterfaceMixin

Class InterfaceMixin

object --+
         |
        InterfaceMixin

Known Subclasses:

Determine the Protein-Protein interface atoms

Instance Methods

[hide private]

str

getInterfaceASL(self, match_ws_entries=True)
Return an ASL for residues at Protein-Protein interfaces.

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

getInterfaceASL(self, match_ws_entries=True)

Return an ASL for residues at Protein-Protein interfaces. An interface is defined as atoms in a chain of > 300 atoms that are within 4.5 A of atoms in another chain of > 300 atoms.

Parameters:

match_ws_entries (bool) - default parameter used to determine if matching workspace entries should be used or if the entries to be checked are from maestro.

Returns: str

An ASL defining the atoms at a protein interface