Package schrodinger :: Package application :: Package bioluminate :: Module protein_structure_quality

Module protein_structure_quality

View the Ramachandran plot and Protein Report in a way that is interactive with the workspace. Operates on the workspace structure.

Classes

[hide private]

FakeMaestro

DataModelWithChart
A subclass of DataModel that calls a sort callback when sorting

MultiReportWithChart
A Protein Report widget that can deal with multiple protein structures and also has a slider chart that can be used to select residues.

HomologyRama
A Ramachandran plot customized for the Protein Structure Quality Viewer

ProteinStructureQualityViewer
The Main Panel Class

Functions

[hide private]

maestro_command(cmd)
Executes cmd as a maestro command and silenty ignores errors.

Variables

[hide private]

__doc__ = ...

maestro = FakeMaestro()

PRESET_RYW = 'Red/Yellow/White'

PRESET_GCR = 'Green/Cyan/Red'

PRESET_RT = 'Ribbons/Tubes'

PRESETS = ['Green/Cyan/Red', 'Red/Yellow/White']

__package__ = 'schrodinger.application.bioluminate'

Function Details

[hide private]

maestro_command(cmd)

Executes cmd as a maestro command and silenty ignores errors. Particularly useful when an ASL may not specify any atoms, which causes Maestro to throw an error even if we don't care about it.

Parameters:

cmd (str) - The maestro command to execute

Variables Details

[hide private]

doc

Value:

"""
View the Ramachandran plot and Protein Report in a way that is interac
tive with
the workspace.  Operates on the workspace structure.

Copyright Schrodinger, LLC. All rights reserved.
"""