A subclass of the canvas fingerprint cluster manager which is to be
used from a program with a command line interface. This class has methods
for defining options in an option parser and for applying those options
once they've been parsed. The idea is to provide a standard command line
interface for setting the clustering options
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__init__(self,
logger)
Initialize the instance of the cluster class |
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addOptions(self,
parser)
Add options for cluster linkage |
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parseOptions(self,
options)
Examine the options and set the internal state to reflect them |
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getLinkageDescription(self)
Return a string which contains a description of the linkage methods
available for cluster linkage |
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Inherited from CanvasFingerprintCluster:
__del__,
clusterDM,
clusterFP,
debug,
generateDM,
getAverageDistanceFromCentroid,
getBestNumberOfClusters,
getClusterContents,
getClusterOrderMap,
getClusterTime,
getClusterVariance,
getClusteringMap,
getCurrentLinkage,
getDendrogramData,
getDescription,
getDistanceMatrixFile,
getDistanceToCentroid,
getGroupTime,
getIsFarthestFromCentroid,
getIsNearestToCentroid,
getKelleyPenaltyList,
getMatrixTime,
getMaxDistanceFromCentroid,
getMergeDistanceList,
getNumberOfClustersList,
getRSquaredList,
getSemiPartialRSquaredList,
getSeparationRatioList,
group,
setLinkage
Inherited from object:
__delattr__,
__format__,
__getattribute__,
__hash__,
__new__,
__reduce__,
__reduce_ex__,
__repr__,
__setattr__,
__sizeof__,
__str__,
__subclasshook__
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