Module sequence

Functions

[hide private]

Sequences(system_or_chain, distinct=True)
return list of sequences, one for each chain, for the given input.

Variables

[hide private]

code = {"ALA": 'A', "ARG": 'R', "ASH": 'D', "ASN": 'N', "ASP":...

Function Details

[hide private]

Sequences(system_or_chain, distinct=True)

return list of sequences, one for each chain, for the given input. The sequence will be returned as a string, with characters corresponding to the 1-letter sequence codes. If a Chain is provided instead of a System, only one sequence will be returned.

If distinct is True, only distinct sequences will be returned.

Variables Details

[hide private]

code

Value:

{"ALA": 'A', "ARG": 'R', "ASH": 'D', "ASN": 'N', "ASP": 'D', "ASX": 'B
', "CYM": 'C', "CYS": 'C', "CYX": 'C', "GLH": 'E', "GLN": 'Q', "GLU": 
'E', "GLX": 'Z', "GLY": 'G', "HID": 'H', "HIE": 'H', "HIP": 'H', "HIS"
: 'H', "HSD": 'H', "HSE": 'H', "ILE": 'I', "LEU": 'L', "LYN": 'K', "LY
S": 'K', "MET": 'M', "PHE": 'F', "PRO": 'P', "SER": 'S', "THR": 'T', "
TRP": 'W', "TYM": 'Y', "TYR": 'Y', "UNK": 'X', "VAL": 'V',}