Package schrodinger :: Package application :: Package jaguar :: Package gui :: Package tabs :: Module properties_tab :: Class SurfacesSubTab

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Class SurfacesSubTab

       object --+                    
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sip.simplewrapper --+                
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          sip.wrapper --+            
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     PyQt4.QtCore.QObject --+        
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            Qt.QtCore.QObject --+    
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                       BaseSubTab --+
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                                   SurfacesSubTab

This sub tab class is used for Surfaces property.

Instance Methods

[hide private]

setup(self)
This function is called to customize sub tab behavior.

dict

getMmJagKeywords(self, checked)
This function returns dictionary of mmjag keywords for this sub tab.

_getElectrostaticKeywords(self)
This function gets electrostatic potential and ionization energy surface keywords.

_getNoncovalentKeywords(self)
This function returns keywords for noncovalent surface options.

_getElectroDensityKeywords(self)
This function returns keywords for electron density surface options.

_getSpinDensityKeywords(self)
This function returns keywords for spin density options.

_getOrbitalsKeywords(self)
This function returns keywords for molecular orbitals options.

_getBoxKeywords(self)
This function returns keywords for box size and grid density options.

_getDefaultKeywords(self)
This function returns default keywords.

loadSettings(self, keywords)
This function restores this sub tab from the keywords dictionary.

bool

_loadSurfaceSettings(self, keywords)
This function determines surfaces settings from mmjag keywords.

bool

_loadOrbitalsSettings(self, keywords)
This function loads orbitals settings from mmjag keywords.

theoryUpdated(self, theory_level, dft_functional, spin_treatment, basis)
This sub tab needs to be updated when theory level or 'spin unrestricted' toggle state are changed.

_updateOrbitals(self)
This function checks surfaces tabs widget states and theory settings and enables various molecular orbitals widgets as needed.

_enableEnergyUnits(self)
This function is used to check state of 'Electrostatic potential' and 'Average local ionization energy' check boxes to determine whether 'Energy units' combo box should be enabled.

_updateTotalAlphaOrbitals(self)
This function calculates total number of 'alpha' orbitals.

_updateTotalBetaOrbitals(self)
This function calculates total number of 'alpha' orbitals.

str

_totalOrbitalsLabel(self, start_base, start, end_base, end)
Calculate total number of orbitals and return text to display in the label.

dict

_getOrbitals(self, orbitals)
This function returns keywords for the given list of orbitals.

bool

_setOrbital(self, iorb, value)
This function sets widgets corresponding to a given molecular orbital.

_setOrbitalDefault(self, iorb)
Set orbital widgets to default values.

tuple

_parseOrbitalValue(self, iorb, value)
This function splits given orbital value into base ('homo-' or 'lumo+') and an orbital count.

tuple

getSettingsAffectedBySpinTreatment(self)
Get all mmjag values that need to be set on a per-structure basis dependent on the spin treatment and the spin multiplicity.

Inherited from BaseSubTab: __init__

Inherited from Qt.QtCore.QObject: connect, emit

Inherited from PyQt4.QtCore.QObject: __getattr__, blockSignals, childEvent, children, connectNotify, customEvent, deleteLater, destroyed, disconnect, disconnectNotify, dumpObjectInfo, dumpObjectTree, dynamicPropertyNames, event, eventFilter, findChild, findChildren, inherits, installEventFilter, isWidgetType, killTimer, metaObject, moveToThread, objectName, parent, property, pyqtConfigure, receivers, removeEventFilter, sender, senderSignalIndex, setObjectName, setParent, setProperty, signalsBlocked, startTimer, thread, timerEvent, tr, trUtf8

Inherited from sip.simplewrapper: __new__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

SURFACES_ORBITAL_HOMOMINUS = 'homo-'

SURFACES_ORBITAL_LUMOPLUS = 'lumo+'

MOLECULAR_ORBITALS = OrderedDict([('HOMO-', 'homo-'), ('LUMO+'...

ALPHA_ORBITALS = ['iorb1a', 'iorb2a']

BETA_ORBITALS = ['iorb1b', 'iorb2b']

DEFAULT_ORBITAL = '0'

collections.OrderedDict ENERGY_UNIT_METHOD = OrderedDict([('kcal/mol', 4), ('kcal/mol/...
An OrderedDict of {energy unit method: mmjag keyword value} used to populate 'Energy units' combo box.

Inherited from PyQt4.QtCore.QObject: staticMetaObject

Instance Variables

[hide private]

Inherited from BaseSubTab: row_id, spin, theory_level, ui

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

setup(self)

This function is called to customize sub tab behavior. It should be reimplemented for any subclass that has custom features.

Overrides: BaseSubTab.setup: (inherited documentation)

getMmJagKeywords(self, checked)

This function returns dictionary of mmjag keywords for this sub tab. It is only used for tabs that don't have options.

Parameters:

checked - True if property row is 'checked'

Returns: dict

mmjag keywords dictionary

Overrides: BaseSubTab.getMmJagKeywords

(inherited documentation)

loadSettings(self, keywords)

This function restores this sub tab from the keywords dictionary.

Parameters:

keywords - mmjag keywrods dictionary

Overrides: BaseSubTab.loadSettings

(inherited documentation)

_loadSurfaceSettings(self, keywords)

This function determines surfaces settings from mmjag keywords. If any of the surface calculations are on return True, otherwise return False.

Parameters:

keywords (dict) - mmjag keywords dictionary

Returns: bool

True if at least one surface calculation is 'checked'.

_loadOrbitalsSettings(self, keywords)

This function loads orbitals settings from mmjag keywords.

Parameters:

keywords (dict) - mmjag keywrods dictionary

Returns: bool

False if all orbitals have default value of DEFAULT_ORBITAL. True otherwise.

theoryUpdated(self, theory_level, dft_functional, spin_treatment, basis)

This sub tab needs to be updated when theory level or 'spin unrestricted' toggle state are changed.

Parameters:

theory - The current level of theory. Must be one of "DFT", "HF" or "LMP2"
dft_functional - If c{theory} is "DFT", the currently selected functional level. If theory is not "DFT" or if the user has not specified a functional level, should be None.
spin_unrestricted - Whether the spin-unrestricted check box is checked in the theory tab. If theory is "LMP2", should be None.
basis - The currently selected basis set without the polarization or diffuse levels (i.e. "6-31G" rather than "6-31G**+")

Overrides: BaseSubTab.theoryUpdated

_totalOrbitalsLabel(self, start_base, start, end_base, end)

Calculate total number of orbitals and return text to display in the label.

Parameters:

start_base (int) - start orbitals base (HOMOMINUS or LUMOPLUS)
start (int) - start orbitals index
end_base (int) - end orbitals base (HOMOMINUS or LUMOPLUS)
end (int) - end orbitals index

Returns: str

text of label to show total number of orbitals

_getOrbitals(self, orbitals)

This function returns keywords for the given list of orbitals.

Parameters:

orbitals (list) - list of orbitals that contains mmjag keywords for iorb1a, iorb2a etc.

Returns: dict

dictionary of orbital setting, which has mmjag orbitals as keys and values that have format <homo-|lumo+>N.

_setOrbital(self, iorb, value)

This function sets widgets corresponding to a given molecular orbital. Orbital's base and count are parsed from a given value argument, which has format <homo-|lumo+>N.

Parameters:

iorb (string) - molecular orbital specified by mmjag keywords, such as iorb1a, iorb2a, iorb1b or iorb2b.
value (string) - orbital value obtained from mmjag keywords

Returns: bool

True if default orbital value was found and False otherwise

_setOrbitalDefault(self, iorb)

Set orbital widgets to default values. If 'from' orbital it will be homo-0 and if 'to' orbital it will be lumo+0.

Parameters:

iorb (string) - molecular orbital specified by mmjag keywords, such as iorb1a, iorb2a, iorb1b or iorb2b.

_parseOrbitalValue(self, iorb, value)

This function splits given orbital value into base ('homo-' or 'lumo+') and an orbital count. It then returns a (base, count) tuple. An exception is raised if value does not have format <homo-|lumo+>N.

Parameters:

iorb (string) - molecular orbital specified by mmjag keywords, such as iorb1a, iorb2a, iorb1b or iorb2b.
value (string) - mmjag orbital value

Returns: tuple

tuple that contains orbital's base and count

getSettingsAffectedBySpinTreatment(self)

Get all mmjag values that need to be set on a per-structure basis dependent on the spin treatment and the spin multiplicity.

Returns: tuple

A tuple of

A dictionary of {keyword: value} for all settings required for an unrestricted spin treatment
A dictionary of {keyword: value} for all settings required for a restricted spin treatment

Class Variable Details

[hide private]

MOLECULAR_ORBITALS

Value:

OrderedDict([('HOMO-', 'homo-'), ('LUMO+', 'lumo+')])

ENERGY_UNIT_METHOD

An OrderedDict of {energy unit method: mmjag keyword value} used to populate 'Energy units' combo box.

Type:: collections.OrderedDict

Value:

OrderedDict([('kcal/mol', 4), ('kcal/mol/electron', 1), ('kT/electorn 
at 298.15K', 2), ('hartrees', 3), ('kT at 298.15K', 5), ('eV', 6)])