Package schrodinger :: Package application :: Package mcpro :: Module modelsystemwizard :: Class _Flex

Class _Flex

             ui.widget.pmwwidget.schroPmwWrapper --+    
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_Pmw.Pmw_1_3_3.lib.PmwBase.MegaArchetype --+       |    
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       _Pmw.Pmw_1_3_3.lib.PmwBase.MegaWidget --+   |    
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               _Pmw.Pmw_1_3_3.lib.PmwGroup.Group --+    
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                           ui.widget.pmwwidget.Group --+
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                                                      _Flex

Class for drawing and managing the `Constrain molecules' panel

Instance Methods

[hide private]

__init__(self, master, model_sys, display_update)
See class docstring.

is_cartesian_toggle(self)
Method in response to ligand toggle.

prot_toggle(self)
This is the function in response to the protein toggle.

set_flex_rad(self)
Recolors the protein to give a rough idea which part of the protein will be flexible.

initialize(self)
Resets/initializes the panel.

Inherited from ui.widget.pmwwidget.schroPmwWrapper: cleanup_components, grid, pack

Inherited from ui.widget.pmwwidget.schroPmwWrapper (private): _cleanup_component, _getDflts, _get_clean_dflts, _get_geometry_defaults, _repack_component, _retrievePmwDflts, _retrieveTkDflts, _update_placement

Inherited from _Pmw.Pmw_1_3_3.lib.PmwGroup.Group: collapse, expand, interior, toggle

Inherited from _Pmw.Pmw_1_3_3.lib.PmwBase.MegaWidget: after, after_cancel, after_idle, bbox, bell, bind, bind_all, bind_class, bindtags, clipboard_append, clipboard_clear, clipboard_get, colormodel, columnconfigure, config, deletecommand, event_add, event_delete, event_generate, event_info, focus, focus_displayof, focus_force, focus_get, focus_lastfor, focus_set, forget, getboolean, getvar, grab_current, grab_release, grab_set, grab_set_global, grab_status, grid_bbox, grid_columnconfigure, grid_configure, grid_forget, grid_info, grid_location, grid_propagate, grid_remove, grid_rowconfigure, grid_size, grid_slaves, image_names, image_types, info, keys, lift, lower, mainloop, nametowidget, option_add, option_clear, option_get, option_readfile, pack_configure, pack_forget, pack_info, pack_propagate, pack_slaves, place, place_configure, place_forget, place_info, place_slaves, propagate, quit, register, rowconfigure, selection_clear, selection_get, selection_handle, selection_own, selection_own_get, send, setvar, size, slaves, tk_bisque, tk_focusFollowsMouse, tk_focusNext, tk_focusPrev, tk_menuBar, tk_setPalette, tk_strictMotif, tkraise, unbind, unbind_all, unbind_class, update, update_idletasks, wait_variable, wait_visibility, wait_window, waitvar, winfo_atom, winfo_atomname, winfo_cells, winfo_children, winfo_class, winfo_colormapfull, winfo_containing, winfo_depth, winfo_exists, winfo_fpixels, winfo_geometry, winfo_height, winfo_id, winfo_interps, winfo_ismapped, winfo_manager, winfo_name, winfo_parent, winfo_pathname, winfo_pixels, winfo_pointerx, winfo_pointerxy, winfo_pointery, winfo_reqheight, winfo_reqwidth, winfo_rgb, winfo_rootx, winfo_rooty, winfo_screen, winfo_screencells, winfo_screendepth, winfo_screenheight, winfo_screenmmheight, winfo_screenmmwidth, winfo_screenvisual, winfo_screenwidth, winfo_server, winfo_toplevel, winfo_viewable, winfo_visual, winfo_visualid, winfo_visualsavailable, winfo_vrootheight, winfo_vrootwidth, winfo_vrootx, winfo_vrooty, winfo_width, winfo_x, winfo_y

Inherited from _Pmw.Pmw_1_3_3.lib.PmwBase.MegaArchetype: __getitem__, __setitem__, __str__, addoptions, cget, component, componentaliases, componentgroup, components, configure, createcomponent, createlabel, defineoptions, destroy, destroycomponent, hulldestroyed, initialiseoptions, isinitoption, options

Class Variables

[hide private]

DEFAULT_PROT_RAD = "8"

AVAILABLE_FF = "OPLS_2005"

DEFAULT_FF = AVAILABLE_FF [0]

Method Details

[hide private]

init(self, master, model_sys, display_update)
(Constructor)

See class docstring.

Overrides: _Pmw.Pmw_1_3_3.lib.PmwBase.MegaArchetype.__init__

is_cartesian_toggle(self)

Method in response to ligand toggle. Updates model system's is_cartesian attribute

prot_toggle(self)

This is the function in response to the protein toggle. This function will update model system's`is_cartesian' attribute and recolor the protein in the workspace to show which sidechain will be flexible.

initialize(self)

Resets/initializes the panel. This panel is affected by the model system type and by the condition whether an existing zmatrix file will be used for the protein or not.

Class _Flex

__init__(self, master, model_sys, display_update) (Constructor)

is_cartesian_toggle(self)

prot_toggle(self)

initialize(self)

init(self, master, model_sys, display_update)
(Constructor)