Module constants

Variables

[hide private]

AMINO_ACIDS = {'A': ['ALA', 'Alanine'], 'C': ['CYS', 'Cysteine...

GAP_CHARS = ['~', '-', '.']

GONNET = {('A', 'A'): 2.4, ('A', 'C'): 0.5, ('A', 'P'): 0.3, (...

PAM250 = {('A', 'A'): 2, ('B', 'A'): 0, ('B', 'B'): 3, ('B', '...

BLOSUM45 = {('A', 'A'): 5, ('B', 'A'): -1, ('B', 'B'): 4, ('B'...

BLOSUM62 = {('A', 'A'): 4, ('B', 'A'): -2, ('B', 'B'): 4, ('B'...

BLOSUM80 = {('A', 'A'): 5, ('B', 'A'): -2, ('B', 'B'): 4, ('B'...

AMINO_ACIDS_3_TO_1 = {'2AS': 'D', '3AH': 'H', '5HP': 'E', 'ACL...

__package__ = None
hash(x)

Variables Details

[hide private]

AMINO_ACIDS

Value:

{'A': ['ALA', 'Alanine'],
 'C': ['CYS', 'Cysteine'],
 'D': ['ASP', 'Aspartic acid'],
 'E': ['GLU', 'Glutamic acid'],
 'F': ['PHE', 'Phenylalanine'],
 'G': ['GLY', 'Glycine'],
 'H': ['HIS', 'Histidine'],
 'I': ['ILE', 'Isoleucine'],
...

GONNET

Value:

{('A', 'A'): 2.4,
 ('A', 'C'): 0.5,
 ('A', 'P'): 0.3,
 ('A', 'S'): 1.1,
 ('A', 'T'): 0.6,
 ('C', 'C'): 11.5,
 ('D', 'A'): -0.3,
 ('D', 'C'): -3.2,
...

PAM250

Value:

{('A', 'A'): 2,
 ('B', 'A'): 0,
 ('B', 'B'): 3,
 ('B', 'C'): -4,
 ('B', 'D'): 3,
 ('B', 'E'): 3,
 ('B', 'F'): -4,
 ('B', 'G'): 0,
...

BLOSUM45

Value:

{('A', 'A'): 5,
 ('B', 'A'): -1,
 ('B', 'B'): 4,
 ('B', 'C'): -2,
 ('B', 'D'): 5,
 ('B', 'E'): 1,
 ('B', 'F'): -3,
 ('B', 'G'): -1,
...

BLOSUM62

Value:

{('A', 'A'): 4,
 ('B', 'A'): -2,
 ('B', 'B'): 4,
 ('B', 'C'): -3,
 ('B', 'D'): 4,
 ('B', 'E'): 1,
 ('B', 'F'): -3,
 ('B', 'G'): -1,
...

BLOSUM80

Value:

{('A', 'A'): 5,
 ('B', 'A'): -2,
 ('B', 'B'): 4,
 ('B', 'C'): -4,
 ('B', 'D'): 4,
 ('B', 'E'): 1,
 ('B', 'F'): -4,
 ('B', 'G'): -1,
...

AMINO_ACIDS_3_TO_1

Value:

{'2AS': 'D',
 '3AH': 'H',
 '5HP': 'E',
 'ACL': 'R',
 'AGM': 'R',
 'AIB': 'A',
 'ALA': 'A',
 'ALM': 'A',
...