Package schrodinger :: Package application :: Package msv :: Package gui :: Module viewmodel :: Class AlignmentMetricsProxyModel

[frames] | no frames]

Class AlignmentMetricsProxyModel

         object --+                            
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  sip.simplewrapper --+                        
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            sip.wrapper --+                    
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       PyQt4.QtCore.QObject --+                
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PyQt4.QtCore.QAbstractItemModel --+            
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    PyQt4.QtGui.QAbstractProxyModel --+        
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          Qt.QtCore.QAbstractProxyModel --+    
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                             NonNestedProxy --+
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                                             AlignmentMetricsProxyModel

A proxy model that contains the alignment metrics, such as percentage of identity, similarity, homology and score to the reference sequence.

Instance Methods

[hide private]

__init__(self, include_gaps=False, parent=None)
x.__init__(...) initializes x; see help(type(x)) for signature

setSourceModel(self, model)

bool

getIncludeGaps(self)
Returns: Whether to include gaps.

setIncludeGaps(self, include_gaps)

data(self, index, role)

rowCount(self, parent=None)

columnCount(self, parent=None)

mapToSource(self, proxy_index)

mapFromSource(self, source_index)

Inherited from NonNestedProxy: index, parent, resetCountCache

Inherited from Qt.QtCore.QAbstractProxyModel: setRoleNames, setSupportedDragActions

Inherited from PyQt4.QtGui.QAbstractProxyModel: buddy, canFetchMore, fetchMore, flags, hasChildren, headerData, itemData, mapSelectionFromSource, mapSelectionToSource, mimeData, mimeTypes, revert, setData, setHeaderData, setItemData, sort, sourceModel, span, submit, supportedDropActions

Inherited from PyQt4.QtCore.QAbstractItemModel: beginInsertColumns, beginInsertRows, beginMoveColumns, beginMoveRows, beginRemoveColumns, beginRemoveRows, beginResetModel, changePersistentIndex, changePersistentIndexList, columnsAboutToBeInserted, columnsAboutToBeMoved, columnsAboutToBeRemoved, columnsInserted, columnsMoved, columnsRemoved, createIndex, dataChanged, decodeData, dropMimeData, encodeData, endInsertColumns, endInsertRows, endMoveColumns, endMoveRows, endRemoveColumns, endRemoveRows, endResetModel, hasIndex, headerDataChanged, insertColumn, insertColumns, insertRow, insertRows, layoutAboutToBeChanged, layoutChanged, match, modelAboutToBeReset, modelReset, persistentIndexList, removeColumn, removeColumns, removeRow, removeRows, reset, resetInternalData, roleNames, rowsAboutToBeInserted, rowsAboutToBeMoved, rowsAboutToBeRemoved, rowsInserted, rowsMoved, rowsRemoved, sibling, supportedDragActions

Inherited from PyQt4.QtCore.QObject: __getattr__, blockSignals, childEvent, children, connect, connectNotify, customEvent, deleteLater, destroyed, disconnect, disconnectNotify, dumpObjectInfo, dumpObjectTree, dynamicPropertyNames, emit, event, eventFilter, findChild, findChildren, inherits, installEventFilter, isWidgetType, killTimer, metaObject, moveToThread, objectName, property, pyqtConfigure, receivers, removeEventFilter, sender, senderSignalIndex, setObjectName, setParent, setProperty, signalsBlocked, startTimer, thread, timerEvent, tr, trUtf8

Inherited from sip.simplewrapper: __new__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

Inherited from PyQt4.QtCore.QObject: staticMetaObject

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, include_gaps=False, parent=None)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

include_gaps (bool) - Whether to include gaps in calculating metrics.

Overrides: object.__init__

setSourceModel(self, model)

Overrides: PyQt4.QtGui.QAbstractProxyModel.setSourceModel

getIncludeGaps(self)

Returns: bool: Whether to include gaps.

setIncludeGaps(self, include_gaps)

Parameters:

include_gaps (bool) - Whether to include gaps in alignment

data(self, index, role)

Overrides: PyQt4.QtCore.QAbstractItemModel.data

rowCount(self, parent=None)

Overrides: PyQt4.QtCore.QAbstractItemModel.rowCount

columnCount(self, parent=None)

Overrides: PyQt4.QtCore.QAbstractItemModel.columnCount

mapToSource(self, proxy_index)

Overrides: PyQt4.QtGui.QAbstractProxyModel.mapToSource

mapFromSource(self, source_index)

Overrides: PyQt4.QtGui.QAbstractProxyModel.mapFromSource

Class AlignmentMetricsProxyModel

__init__(self, include_gaps=False, parent=None) (Constructor)

setSourceModel(self, model)

getIncludeGaps(self)

setIncludeGaps(self, include_gaps)

data(self, index, role)

rowCount(self, parent=None)

columnCount(self, parent=None)

mapToSource(self, proxy_index)

mapFromSource(self, source_index)

init(self, include_gaps=False, parent=None)
(Constructor)