Module converters
Utilities for converting between different sequence and sequence group
objects.
There are currently three different sequence-related objects that need
to be converted between: a) legacy: This refers to the Sequence and
SequenceGroup classes that live in schrodinger/ui/sequencealignment
b) biopython: This refers to Seq and related classes in the biopython
package. Lightweight converter code should make it easy to benefit from a
lot of this code-base.
c) msv: This refers to the new msv code that currently lives in
schrodinger/application/msv
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SequenceConverter
An object that knows how to construct a legacy sequence from an msv
ProteinSequence.
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LegacySequenceConverter
An object that knows how to convert a legacy Sequence object into
an msv ProteinSequence, complete with annotations.
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SequenceGroupConverter
An object that knows how to convert a legacy SequenceGroup object
into an alignment, i.e., an msv object that holds a collection a
sequences together with alignment information for them.
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__package__ = 'schrodinger.application.msv.io' |