Package schrodinger :: Package application :: Package msv :: Package io :: Module seqio :: Class ClustalAlignmentReader

Class ClustalAlignmentReader

                object --+    
                         |    
BaseProteinAlignmentReader --+
                             |
                            ClustalAlignmentReader

Class for reading Clustal *.aln files.

Instance Methods

[hide private]

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Methods

[hide private]

ProteinAlignment

read(cls, file_name)
Reads alignment in Clustal *.aln format preserving order of sequences.

Inherited from BaseProteinAlignmentReader (private): _makeProteinAlignment

Properties

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Inherited from object: __class__

Method Details

[hide private]

read(cls, file_name)
Class Method

Reads alignment in Clustal *.aln format preserving order of sequences.

Parameters:

file_name - Source file name.

Returns: ProteinAlignment

Read alignment. The alignment can be empty if no sequence was present in the input file.

Raises:

IOError - If output file cannot be read.

Overrides: BaseProteinAlignmentReader.read

Class ClustalAlignmentReader

read(cls, file_name) Class Method

read(cls, file_name)
Class Method