Package schrodinger :: Package application :: Package msv :: Package io :: Module seqio :: Class ClustalAlignmentWriter

Class ClustalAlignmentWriter

                object --+    
                         |    
BaseProteinAlignmentWriter --+
                             |
                            ClustalAlignmentWriter


Class for writing Clustal *.aln files.

The format is described here:
L{http://web.mit.edu/meme_v4.9.0/doc/clustalw-format.html}

Instance Methods

[hide private]

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Methods

[hide private]

write(cls, alignment, file_name, use_unique_names=True)
Writes alignment to a Clustal alignment file.

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

write(cls, alignment, file_name, use_unique_names=True)
Class Method

Writes alignment to a Clustal alignment file.

Parameters:

alignment (BaseAlignment) - Alignment to be written to a file.
file_name (str) - Destination file name.
use_unique_names (bool) - If True, write unique name for each sequence.

Raises:

IOError - If output file cannot be written.

Overrides: BaseProteinAlignmentWriter.write

Class ClustalAlignmentWriter

write(cls, alignment, file_name, use_unique_names=True) Class Method

write(cls, alignment, file_name, use_unique_names=True)
Class Method