|  | 
        
          | PhpAlignCore_getAlignedB(...) PhpAlignCore_getAlignedB(PhpAlignCore self) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpAlignCore_getMappings(...) PhpAlignCore_getMappings(PhpAlignCore self) -> std::vector< 
      PhpCoreMapping,std::allocator< PhpCoreMapping > >
 |  |  | 
    |  | 
        
          | PhpAlignCore_getNumMappings(...) PhpAlignCore_getNumMappings(PhpAlignCore self) -> size_t
 |  |  | 
    |  | 
        
          | PhpAlignCore_stereoFailure(...) PhpAlignCore_stereoFailure(PhpAlignCore self) -> bool
 |  |  | 
    |  | 
        
          | PhpAlignCore_swiginit(...) |  |  | 
    |  | 
        
          | PhpAlignCore_swigregister(...) |  |  | 
    |  | 
        
          | PhpAtomClassDescriptions_getAtomClassDescription(...) PhpAtomClassDescriptions_getAtomClassDescription(PhpAtomClassDescriptions
      self, std::string const & atomClass) -> std::string
 |  |  | 
    |  | 
        
          | PhpAtomClassDescriptions_swiginit(...) |  |  | 
    |  | 
        
          | PhpAtomClassDescriptions_swigregister(...) |  |  | 
    |  | 
        
          | PhpComplex_create(...) PhpComplex_create(PhpComplex self, MM_Index ligandCt, MM_Index receptorCt, std::vector< PhpFeatureDefinition,std::allocator< PhpFeatureDefinition > > const & fd, ...
 |  |  | 
    |  | 
        
          | PhpComplex_getErrMesg(...) PhpComplex_getErrMesg(PhpComplex self) -> std::string
 |  |  | 
    |  | 
        
          | PhpComplex_getLimits(...) PhpComplex_getLimits(PhpComplex self, std::string const & 
      parName) -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpComplex_setDefaultLimits(...) PhpComplex_setDefaultLimits(PhpComplex self)
 |  |  | 
    |  | 
        
          | PhpComplex_setLimits(...) PhpComplex_setLimits(PhpComplex self, std::string const & 
      parName, double parStrict, double parRelaxed)
 |  |  | 
    |  |  | 
    |  | 
        
          | PhpComplex_swigregister(...) |  |  | 
    |  | 
        
          | PhpDeltaHypoSite_deltaXYZ_get(...) PhpDeltaHypoSite_deltaXYZ_get(PhpDeltaHypoSite self) -> double
 |  |  | 
    |  | 
        
          | PhpDeltaHypoSite_deltaXYZ_set(...) PhpDeltaHypoSite_deltaXYZ_set(PhpDeltaHypoSite self, double deltaXYZ)
 |  |  | 
    |  | 
        
          | PhpDeltaHypoSite_siteNumber_get(...) PhpDeltaHypoSite_siteNumber_get(PhpDeltaHypoSite self) -> size_t
 |  |  | 
    |  | 
        
          | PhpDeltaHypoSite_siteNumber_set(...) PhpDeltaHypoSite_siteNumber_set(PhpDeltaHypoSite self, size_t 
      siteNumber)
 |  |  | 
    |  | 
        
          | PhpDeltaHypoSite_siteType_get(...) PhpDeltaHypoSite_siteType_get(PhpDeltaHypoSite self) -> char
 |  |  | 
    |  | 
        
          | PhpDeltaHypoSite_siteType_set(...) PhpDeltaHypoSite_siteType_set(PhpDeltaHypoSite self, char siteType)
 |  |  | 
    |  | 
        
          | PhpDeltaHypoSite_swiginit(...) |  |  | 
    |  | 
        
          | PhpDeltaHypoSite_swigregister(...) |  |  | 
    |  | 
        
          | PhpDeltaHypo_addSiteData(...) addSiteData(char siteType, double deltaXYZ) addSiteData(size_t 
      siteNumber, char siteType, double deltaXYZ) 
      PhpDeltaHypo_addSiteData(PhpDeltaHypo self, PhpDeltaHypoSite 
      siteData)
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_clear(...) PhpDeltaHypo_clear(PhpDeltaHypo self)
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_exportToFile(...) PhpDeltaHypo_exportToFile(PhpDeltaHypo self, std::string const & 
      fileName)
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_exportToStream(...) PhpDeltaHypo_exportToStream(PhpDeltaHypo self, std::ostream & 
      outStream)
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_getDeltaXYZ(...) PhpDeltaHypo_getDeltaXYZ(PhpDeltaHypo self, size_t siteIndex) -> 
      double
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_getSiteData(...) PhpDeltaHypo_getSiteData(PhpDeltaHypo self, size_t siteIndex) -> 
      PhpDeltaHypoSite
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_getSiteNumber(...) PhpDeltaHypo_getSiteNumber(PhpDeltaHypo self, size_t siteIndex) ->
      size_t
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_getSiteType(...) PhpDeltaHypo_getSiteType(PhpDeltaHypo self, size_t siteIndex) -> 
      char
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_importFromFile(...) PhpDeltaHypo_importFromFile(PhpDeltaHypo self, std::string const 
      & fileName)
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_importFromStream(...) PhpDeltaHypo_importFromStream(PhpDeltaHypo self, std::istream & 
      inStream)
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_numSites(...) PhpDeltaHypo_numSites(PhpDeltaHypo self) -> size_t
 |  |  | 
    |  | 
        
          | PhpDeltaHypo_swiginit(...) |  |  | 
    |  | 
        
          | PhpDeltaHypo_swigregister(...) |  |  | 
    |  | 
        
          | PhpException_errCode_get(...) PhpException_errCode_get(PhpException self) -> int
 |  |  | 
    |  | 
        
          | PhpException_errCode_set(...) PhpException_errCode_set(PhpException self, int errCode)
 |  |  | 
    |  | 
        
          | PhpException_errMesg_get(...) PhpException_errMesg_get(PhpException self) -> std::string const 
      &
 |  |  | 
    |  | 
        
          | PhpException_errMesg_set(...) PhpException_errMesg_set(PhpException self, std::string const & 
      errMesg)
 |  |  | 
    |  | 
        
          | PhpException_swiginit(...) |  |  | 
    |  | 
        
          | PhpException_swigregister(...) |  |  | 
    |  | 
        
          | PhpException_what(...) PhpException_what(PhpException self) -> char const *
 |  |  | 
    |  | 
        
          | PhpExclVolSphere_r_get(...) PhpExclVolSphere_r_get(PhpExclVolSphere self) -> double
 |  |  | 
    |  | 
        
          | PhpExclVolSphere_r_set(...) PhpExclVolSphere_r_set(PhpExclVolSphere self, double r)
 |  |  | 
    |  | 
        
          | PhpExclVolSphere_swiginit(...) |  |  | 
    |  | 
        
          | PhpExclVolSphere_swigregister(...) |  |  | 
    |  | 
        
          | PhpExclVolSphere_x_get(...) PhpExclVolSphere_x_get(PhpExclVolSphere self) -> double
 |  |  | 
    |  | 
        
          | PhpExclVolSphere_x_set(...) PhpExclVolSphere_x_set(PhpExclVolSphere self, double x)
 |  |  | 
    |  | 
        
          | PhpExclVolSphere_y_get(...) PhpExclVolSphere_y_get(PhpExclVolSphere self) -> double
 |  |  | 
    |  | 
        
          | PhpExclVolSphere_y_set(...) PhpExclVolSphere_y_set(PhpExclVolSphere self, double y)
 |  |  | 
    |  | 
        
          | PhpExclVolSphere_z_get(...) PhpExclVolSphere_z_get(PhpExclVolSphere self) -> double
 |  |  | 
    |  | 
        
          | PhpExclVolSphere_z_set(...) PhpExclVolSphere_z_set(PhpExclVolSphere self, double z)
 |  |  | 
    |  | 
        
          | PhpExclVol_addSphere(...) PhpExclVol_addSphere(PhpExclVol self, double x, double y, double z, 
      double r)
 |  |  | 
    |  | 
        
          | PhpExclVol_clear(...) PhpExclVol_clear(PhpExclVol self)
 |  |  | 
    |  | 
        
          | PhpExclVol_exportToFile(...) PhpExclVol_exportToFile(PhpExclVol self, std::string const & 
      fileName)
 |  |  | 
    |  | 
        
          | PhpExclVol_exportToMMTableFile(...) PhpExclVol_exportToMMTableFile(PhpExclVol self, std::string const 
      & fileName)
 |  |  | 
    |  | 
        
          | PhpExclVol_exportToStream(...) PhpExclVol_exportToStream(PhpExclVol self, std::ostream & 
      outStream)
 |  |  | 
    |  | 
        
          | PhpExclVol_findViolations(...) PhpExclVol_findViolations(PhpExclVol self, MM_Index ctHandle, size_t 
      maxViolations) -> SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpExclVol_getSphereRadius(...) PhpExclVol_getSphereRadius(PhpExclVol self, size_t sphereIndex) ->
      double
 |  |  | 
    |  | 
        
          | PhpExclVol_getSphereXYZ(...) PhpExclVol_getSphereXYZ(PhpExclVol self, size_t sphereIndex)
 |  |  | 
    |  | 
        
          | PhpExclVol_getTreatHydrogens(...) PhpExclVol_getTreatHydrogens(PhpExclVol self) -> bool
 |  |  | 
    |  | 
        
          | PhpExclVol_importFromAnyFile(...) PhpExclVol_importFromAnyFile(PhpExclVol self, std::string const &
      fileName)
 |  |  | 
    |  | 
        
          | PhpExclVol_importFromFile(...) PhpExclVol_importFromFile(PhpExclVol self, std::string const & 
      fileName)
 |  |  | 
    |  | 
        
          | PhpExclVol_importFromMMTableFile(...) PhpExclVol_importFromMMTableFile(PhpExclVol self, std::string const 
      & fileName)
 |  |  | 
    |  | 
        
          | PhpExclVol_importFromStream(...) PhpExclVol_importFromStream(PhpExclVol self, std::istream & 
      inStream)
 |  |  | 
    |  | 
        
          | PhpExclVol_numShapes(...) PhpExclVol_numShapes(PhpExclVol self) -> size_t
 |  |  | 
    |  | 
        
          | PhpExclVol_numSpheres(...) PhpExclVol_numSpheres(PhpExclVol self) -> size_t
 |  |  | 
    |  | 
        
          | PhpExclVol_removeSphere(...) PhpExclVol_removeSphere(PhpExclVol self, size_t sphereIndex)
 |  |  | 
    |  | 
        
          | PhpExclVol_setSphereRadius(...) PhpExclVol_setSphereRadius(PhpExclVol self, size_t sphereIndex, 
      double r)
 |  |  | 
    |  | 
        
          | PhpExclVol_setSphereXYZ(...) PhpExclVol_setSphereXYZ(PhpExclVol self, size_t sphereIndex, double 
      x, double y, double z)
 |  |  | 
    |  | 
        
          | PhpExclVol_setTreatHydrogens(...) PhpExclVol_setTreatHydrogens(PhpExclVol self, bool treatHydrogens)
 |  |  | 
    |  |  | 
    |  | 
        
          | PhpExclVol_swigregister(...) |  |  | 
    |  | 
        
          | PhpFastShapePair_a_get(...) PhpFastShapePair_a_get(PhpFastShapePair self) -> double
 |  |  | 
    |  | 
        
          | PhpFastShapePair_a_set(...) PhpFastShapePair_a_set(PhpFastShapePair self, double a)
 |  |  | 
    |  | 
        
          | PhpFastShapePair_b_get(...) PhpFastShapePair_b_get(PhpFastShapePair self) -> double
 |  |  | 
    |  | 
        
          | PhpFastShapePair_b_set(...) PhpFastShapePair_b_set(PhpFastShapePair self, double b)
 |  |  | 
    |  | 
        
          | PhpFastShapePair_c_get(...) PhpFastShapePair_c_get(PhpFastShapePair self) -> double
 |  |  | 
    |  | 
        
          | PhpFastShapePair_c_set(...) PhpFastShapePair_c_set(PhpFastShapePair self, double c)
 |  |  | 
    |  | 
        
          | PhpFastShapePair_i1_get(...) PhpFastShapePair_i1_get(PhpFastShapePair self) -> size_t
 |  |  | 
    |  | 
        
          | PhpFastShapePair_i1_set(...) PhpFastShapePair_i1_set(PhpFastShapePair self, size_t i1)
 |  |  | 
    |  | 
        
          | PhpFastShapePair_i2_get(...) PhpFastShapePair_i2_get(PhpFastShapePair self) -> size_t
 |  |  | 
    |  | 
        
          | PhpFastShapePair_i2_set(...) PhpFastShapePair_i2_set(PhpFastShapePair self, size_t i2)
 |  |  | 
    |  | 
        
          | PhpFastShapePair_swiginit(...) |  |  | 
    |  | 
        
          | PhpFastShapePair_swigregister(...) |  |  | 
    |  | 
        
          | PhpFastShape_alignCt(...) PhpFastShape_alignCt(PhpFastShape self, MM_Index ctHandle, double 
      const [3] trans, double const [3][3] rot)
 |  |  | 
    |  | 
        
          | PhpFastShape_alignCtPy(...) PhpFastShape_alignCtPy(PhpFastShape self, MM_Index ctHandle, 
      SwigDoubleVector simTrans)
 |  |  | 
    |  | 
        
          | PhpFastShape_computeShapeSim(...) computeShapeSim(SwigVectorDoubleVector xyz, SwigDoubleVector r, bool first, bool inplace, double & sim, ...
 |  |  | 
    |  | 
        
          | PhpFastShape_computeShapeSimPy(...) PhpFastShape_computeShapeSimPy(PhpFastShape self, MM_Index ctHandle, 
      bool first, bool inplace) -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpFastShape_setDebug(...) PhpFastShape_setDebug(PhpFastShape self, bool debug)
 |  |  | 
    |  | 
        
          | PhpFastShape_swiginit(...) |  |  | 
    |  | 
        
          | PhpFastShape_swigregister(...) |  |  | 
    |  | 
        
          | PhpFeatureClassDescriptions_getFeatureClassDescription(...) PhpFeatureClassDescriptions_getFeatureClassDescription(PhpFeatureClassDescriptions
      self, std::string const & featureClass) -> std::string
 |  |  | 
    |  | 
        
          | PhpFeatureClassDescriptions_swiginit(...) |  |  | 
    |  | 
        
          | PhpFeatureClassDescriptions_swigregister(...) |  |  | 
    |  | 
        
          | PhpFeatureData_clear(...) PhpFeatureData_clear(PhpFeatureData self)
 |  |  | 
    |  | 
        
          | PhpFeatureData_exportToFile(...) PhpFeatureData_exportToFile(PhpFeatureData self, char const * 
      fileName)
 |  |  | 
    |  | 
        
          | PhpFeatureData_exportToStream(...) PhpFeatureData_exportToStream(PhpFeatureData self, std::ostream &
      outStream)
 |  |  | 
    |  | 
        
          | PhpFeatureData_getDataColumn(...) PhpFeatureData_getDataColumn(PhpFeatureData self, std::string const 
      & variant, size_t dataColumn=0) -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpFeatureData_getDataRow(...) PhpFeatureData_getDataRow(PhpFeatureData self, char featureType) 
      -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpFeatureData_getDataValue(...) PhpFeatureData_getDataValue(PhpFeatureData self, char featureType) 
      -> double
 |  |  | 
    |  | 
        
          | PhpFeatureData_importFromFile(...) PhpFeatureData_importFromFile(PhpFeatureData self, char const * 
      fileName)
 |  |  | 
    |  | 
        
          | PhpFeatureData_importFromStream(...) PhpFeatureData_importFromStream(PhpFeatureData self, std::istream 
      & inStream)
 |  |  | 
    |  | 
        
          | PhpFeatureData_numDataColumns(...) PhpFeatureData_numDataColumns(PhpFeatureData self) -> size_t
 |  |  | 
    |  | 
        
          | PhpFeatureData_setDataRow(...) PhpFeatureData_setDataRow(PhpFeatureData self, char featureType, 
      SwigDoubleVector dataRow)
 |  |  | 
    |  | 
        
          | PhpFeatureData_setDataValue(...) PhpFeatureData_setDataValue(PhpFeatureData self, char featureType, 
      double dataValue)
 |  |  | 
    |  | 
        
          | PhpFeatureData_setDefaultDataRow(...) PhpFeatureData_setDefaultDataRow(PhpFeatureData self, 
      SwigDoubleVector dataRow)
 |  |  | 
    |  | 
        
          | PhpFeatureData_setDefaultDataValue(...) PhpFeatureData_setDefaultDataValue(PhpFeatureData self, double 
      dataValue)
 |  |  | 
    |  | 
        
          | PhpFeatureData_swiginit(...) |  |  | 
    |  | 
        
          | PhpFeatureData_swigregister(...) |  |  | 
    |  | 
        
          | PhpFeatureDefinition___eq__(...) PhpFeatureDefinition___eq__(PhpFeatureDefinition self, 
      PhpFeatureDefinition arg2) -> bool
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition___ne__(...) PhpFeatureDefinition___ne__(PhpFeatureDefinition self, 
      PhpFeatureDefinition rhs) -> bool
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_clear(...) PhpFeatureDefinition_clear(PhpFeatureDefinition self)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getAllExcludes(...) PhpFeatureDefinition_getAllExcludes(PhpFeatureDefinition self) -> 
      std::vector< PhpFeaturePattern,std::allocator< 
      PhpFeaturePattern > >
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getAllIncludes(...) PhpFeatureDefinition_getAllIncludes(PhpFeatureDefinition self) -> 
      std::vector< PhpFeaturePattern,std::allocator< 
      PhpFeaturePattern > >
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getExcludePattern(...) PhpFeatureDefinition_getExcludePattern(PhpFeatureDefinition self, 
      size_t a_i) -> PhpFeaturePattern
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getExtendDistance(...) PhpFeatureDefinition_getExtendDistance(PhpFeatureDefinition self) 
      -> double
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getFeatureComment(...) PhpFeatureDefinition_getFeatureComment(PhpFeatureDefinition self) 
      -> std::string
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getFeatureName(...) PhpFeatureDefinition_getFeatureName(PhpFeatureDefinition self) -> 
      std::string
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getFeatureNumber(...) PhpFeatureDefinition_getFeatureNumber(PhpFeatureDefinition self) 
      -> size_t
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getFeatureType(...) PhpFeatureDefinition_getFeatureType(PhpFeatureDefinition self) -> 
      char
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getIncludePattern(...) PhpFeatureDefinition_getIncludePattern(PhpFeatureDefinition self, 
      size_t a_i) -> PhpFeaturePattern
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getNumExcludes(...) PhpFeatureDefinition_getNumExcludes(PhpFeatureDefinition self) -> 
      size_t
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getNumIncludes(...) PhpFeatureDefinition_getNumIncludes(PhpFeatureDefinition self) -> 
      size_t
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getProjectedType(...) PhpFeatureDefinition_getProjectedType(PhpFeatureDefinition self) 
      -> bool
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_getSasOptions(...) PhpFeatureDefinition_getSasOptions(PhpFeatureDefinition self) -> 
      PhpSASOptions
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setAllExcludes(...) PhpFeatureDefinition_setAllExcludes(PhpFeatureDefinition self, 
      std::vector< PhpFeaturePattern,std::allocator< 
      PhpFeaturePattern > > & rhs)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setAllIncludes(...) PhpFeatureDefinition_setAllIncludes(PhpFeatureDefinition self, 
      std::vector< PhpFeaturePattern,std::allocator< 
      PhpFeaturePattern > > & rhs)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setExcludePattern(...) PhpFeatureDefinition_setExcludePattern(PhpFeatureDefinition self, 
      PhpFeaturePattern rhs)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setExtendDistance(...) PhpFeatureDefinition_setExtendDistance(PhpFeatureDefinition self, 
      double const a_d)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setFeatureComment(...) PhpFeatureDefinition_setFeatureComment(PhpFeatureDefinition self, 
      std::string const a_comment)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setFeatureName(...) PhpFeatureDefinition_setFeatureName(PhpFeatureDefinition self, 
      std::string const & a_name)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setFeatureNumber(...) PhpFeatureDefinition_setFeatureNumber(PhpFeatureDefinition self, 
      size_t a_i)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setFeatureType(...) PhpFeatureDefinition_setFeatureType(PhpFeatureDefinition self, char 
      a_type)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setIncludePattern(...) PhpFeatureDefinition_setIncludePattern(PhpFeatureDefinition self, 
      PhpFeaturePattern rhs)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setProjectedTypeOff(...) PhpFeatureDefinition_setProjectedTypeOff(PhpFeatureDefinition self)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setProjectedTypeOn(...) PhpFeatureDefinition_setProjectedTypeOn(PhpFeatureDefinition self)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_setSasOptions(...) PhpFeatureDefinition_setSasOptions(PhpFeatureDefinition self, 
      PhpSASOptions const & a_sas)
 |  |  | 
    |  | 
        
          | PhpFeatureDefinition_swiginit(...) |  |  | 
    |  | 
        
          | PhpFeatureDefinition_swigregister(...) |  |  | 
    |  | 
        
          | PhpFeaturePattern___eq__(...) PhpFeaturePattern___eq__(PhpFeaturePattern self, PhpFeaturePattern 
      arg2) -> bool
 |  |  | 
    |  | 
        
          | PhpFeaturePattern___ne__(...) PhpFeaturePattern___ne__(PhpFeaturePattern self, PhpFeaturePattern 
      rhs) -> bool
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getAtomList(...) PhpFeaturePattern_getAtomList(PhpFeaturePattern self) -> 
      SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getEditStatus(...) PhpFeaturePattern_getEditStatus(PhpFeaturePattern self) -> bool
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getExtendDistance(...) PhpFeaturePattern_getExtendDistance(PhpFeaturePattern self) -> 
      double
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getGeometry(...) PhpFeaturePattern_getGeometry(PhpFeaturePattern self) -> 
      std::string
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getPattern(...) PhpFeaturePattern_getPattern(PhpFeaturePattern self) -> 
      std::string
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getPatternID(...) PhpFeaturePattern_getPatternID(PhpFeaturePattern self) -> int
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getPattyHandle(...) PhpFeaturePattern_getPattyHandle(PhpFeaturePattern self) -> int
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getProjectedType(...) PhpFeaturePattern_getProjectedType(PhpFeaturePattern self) -> int
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getType(...) PhpFeaturePattern_getType(PhpFeaturePattern self) -> int
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getTypeSimilarity(...) PhpFeaturePattern_getTypeSimilarity(PhpFeaturePattern self) -> int
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_getUsedStatus(...) PhpFeaturePattern_getUsedStatus(PhpFeaturePattern self) -> bool
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setAtomList(...) PhpFeaturePattern_setAtomList(PhpFeaturePattern self, SwigSizetVector
      rhs)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setEditOff(...) PhpFeaturePattern_setEditOff(PhpFeaturePattern self)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setEditOn(...) PhpFeaturePattern_setEditOn(PhpFeaturePattern self)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setExtendDistance(...) PhpFeaturePattern_setExtendDistance(PhpFeaturePattern self, double 
      const a_d)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setGeometry(...) PhpFeaturePattern_setGeometry(PhpFeaturePattern self, std::string 
      const & a_geometry)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setPattern(...) PhpFeaturePattern_setPattern(PhpFeaturePattern self, std::string 
      const & a_pattern)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setPatternID(...) PhpFeaturePattern_setPatternID(PhpFeaturePattern self, int 
      a_patternID)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setPattyHandle(...) PhpFeaturePattern_setPattyHandle(PhpFeaturePattern self, int const 
      a_handle)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setProjectedType(...) PhpFeaturePattern_setProjectedType(PhpFeaturePattern self, int 
      a_type)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setType(...) PhpFeaturePattern_setType(PhpFeaturePattern self, int a_type)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setTypeSimilarity(...) PhpFeaturePattern_setTypeSimilarity(PhpFeaturePattern self, int 
      a_typeSimilarity)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setUsedOff(...) PhpFeaturePattern_setUsedOff(PhpFeaturePattern self)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_setUsedOn(...) PhpFeaturePattern_setUsedOn(PhpFeaturePattern self)
 |  |  | 
    |  | 
        
          | PhpFeaturePattern_swiginit(...) |  |  | 
    |  | 
        
          | PhpFeaturePattern_swigregister(...) |  |  | 
    |  | 
        
          | PhpFeatureRules_addRule(...) PhpFeatureRules_addRule(PhpFeatureRules self, size_t siteNumber, 
      std::string const & permitted, std::string const & 
      prohibited)
 |  |  | 
    |  | 
        
          | PhpFeatureRules_clear(...) PhpFeatureRules_clear(PhpFeatureRules self)
 |  |  | 
    |  | 
        
          | PhpFeatureRules_containsVariant(...) PhpFeatureRules_containsVariant(PhpFeatureRules self, std::string 
      const & variant) -> bool
 |  |  | 
    |  | 
        
          | PhpFeatureRules_exportToFile(...) PhpFeatureRules_exportToFile(PhpFeatureRules self, std::string const 
      & ruleFile)
 |  |  | 
    |  | 
        
          | PhpFeatureRules_exportToStream(...) PhpFeatureRules_exportToStream(PhpFeatureRules self, std::ostream 
      & ruleStream)
 |  |  | 
    | SwigStringVector | 
        
          | PhpFeatureRules_getPermittedFeatures() PhpFeatureRules_getPermittedFeatures(PhpFeatureRules self, size_t 
      siteIndex) -> std::string
 |  |  | 
    | SwigStringVector | 
        
          | PhpFeatureRules_getProhibitedFeatures() PhpFeatureRules_getProhibitedFeatures(PhpFeatureRules self, size_t 
      siteIndex) -> std::string
 |  |  | 
    |  | 
        
          | PhpFeatureRules_getSiteNumber(...) PhpFeatureRules_getSiteNumber(PhpFeatureRules self, size_t siteIndex)
      -> size_t
 |  |  | 
    |  | 
        
          | PhpFeatureRules_getVariant(...) PhpFeatureRules_getVariant(PhpFeatureRules self) -> std::string
 |  |  | 
    |  | 
        
          | PhpFeatureRules_hasMixedFeatures(...) PhpFeatureRules_hasMixedFeatures(PhpFeatureRules self) -> bool
 |  |  | 
    |  | 
        
          | PhpFeatureRules_importFromFile(...) PhpFeatureRules_importFromFile(PhpFeatureRules self, std::string 
      const & ruleFile)
 |  |  | 
    |  | 
        
          | PhpFeatureRules_importFromStream(...) PhpFeatureRules_importFromStream(PhpFeatureRules self, std::istream 
      & ruleStream)
 |  |  | 
    |  | 
        
          | PhpFeatureRules_numSites(...) PhpFeatureRules_numSites(PhpFeatureRules self) -> size_t
 |  |  | 
    |  | 
        
          | PhpFeatureRules_swiginit(...) |  |  | 
    |  | 
        
          | PhpFeatureRules_swigregister(...) |  |  | 
    |  | 
        
          | PhpHiClusterPair_cluster1_get(...) PhpHiClusterPair_cluster1_get(PhpHiClusterPair self) -> 
      SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpHiClusterPair_cluster1_set(...) PhpHiClusterPair_cluster1_set(PhpHiClusterPair self, SwigSizetVector 
      cluster1)
 |  |  | 
    |  | 
        
          | PhpHiClusterPair_cluster2_get(...) PhpHiClusterPair_cluster2_get(PhpHiClusterPair self) -> 
      SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpHiClusterPair_cluster2_set(...) PhpHiClusterPair_cluster2_set(PhpHiClusterPair self, SwigSizetVector 
      cluster2)
 |  |  | 
    |  | 
        
          | PhpHiClusterPair_d12_get(...) PhpHiClusterPair_d12_get(PhpHiClusterPair self) -> double
 |  |  | 
    |  | 
        
          | PhpHiClusterPair_d12_set(...) PhpHiClusterPair_d12_set(PhpHiClusterPair self, double d12)
 |  |  | 
    |  | 
        
          | PhpHiClusterPair_swiginit(...) |  |  | 
    |  | 
        
          | PhpHiClusterPair_swigregister(...) |  |  | 
    |  | 
        
          | PhpHiCluster_clear(...) PhpHiCluster_clear(PhpHiCluster self)
 |  |  | 
    |  | 
        
          | PhpHiCluster_clearClusters(...) PhpHiCluster_clearClusters(PhpHiCluster self)
 |  |  | 
    |  | 
        
          | PhpHiCluster_createClusters(...) PhpHiCluster_createClusters(PhpHiCluster self)
 |  |  | 
    |  | 
        
          | PhpHiCluster_getClusterCutPoints(...) PhpHiCluster_getClusterCutPoints(PhpHiCluster self, size_t 
      numClusters) -> SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpHiCluster_getClusterSizes(...) PhpHiCluster_getClusterSizes(PhpHiCluster self, size_t numClusters) 
      -> SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpHiCluster_getClusters(...) PhpHiCluster_getClusters(PhpHiCluster self, size_t numClusters) ->
      SwigVectorSizetVector
 |  |  | 
    |  | 
        
          | PhpHiCluster_getClustersMerged(...) PhpHiCluster_getClustersMerged(PhpHiCluster self, size_t numClusters)
      -> PhpHiClusterPair
 |  |  | 
    |  | 
        
          | PhpHiCluster_numObs(...) PhpHiCluster_numObs(PhpHiCluster self) -> size_t
 |  |  | 
    |  | 
        
          | PhpHiCluster_printSummary(...) PhpHiCluster_printSummary(PhpHiCluster self, std::ostream & 
      outStream, size_t base=0)
 |  |  | 
    |  | 
        
          | PhpHiCluster_setDmatrix(...) PhpHiCluster_setDmatrix(PhpHiCluster self, SwigVectorDoubleVector 
      dmatrix)
 |  |  | 
    |  | 
        
          | PhpHiCluster_setLinkageType(...) PhpHiCluster_setLinkageType(PhpHiCluster self, int const linkageType)
 |  |  | 
    |  | 
        
          | PhpHiCluster_swiginit(...) |  |  | 
    |  | 
        
          | PhpHiCluster_swigregister(...) |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addAttr(...) PhpHypoAdaptor_addAttr(PhpHypoAdaptor self, std::string const & 
      fileName, bool hydrogens=False)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addCnst(...) PhpHypoAdaptor_addCnst(PhpHypoAdaptor self, PhpSiteConstrainer cnst)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addCt(...) PhpHypoAdaptor_addCt(PhpHypoAdaptor self, MM_Index ctHandle, 
      std::string const & role)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addIvol(...) PhpHypoAdaptor_addIvol(PhpHypoAdaptor self, PhpExclVol ivol)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addMask(...) PhpHypoAdaptor_addMask(PhpHypoAdaptor self, PhpSiteMask mask)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addProp(...) addProp(std::string const & propName, std::string const & 
      propValue) addProp(std::string const & propName, int propValue) 
      PhpHypoAdaptor_addProp(PhpHypoAdaptor self, std::string const & 
      propName, double propValue)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addQsar(...) PhpHypoAdaptor_addQsar(PhpHypoAdaptor self, PhpQSAR qsar)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addRad(...) PhpHypoAdaptor_addRad(PhpHypoAdaptor self, PhpFeatureData rad)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addRules(...) PhpHypoAdaptor_addRules(PhpHypoAdaptor self, PhpFeatureRules rules)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addTol(...) PhpHypoAdaptor_addTol(PhpHypoAdaptor self, PhpDeltaHypo tol)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addTolByType(...) PhpHypoAdaptor_addTolByType(PhpHypoAdaptor self, PhpFeatureData tol)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_addXvol(...) PhpHypoAdaptor_addXvol(PhpHypoAdaptor self, PhpExclVol xvol, bool 
      hydrogens=False)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_deleteAttr(...) PhpHypoAdaptor_deleteAttr(PhpHypoAdaptor self, std::string const 
      & name)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getAddCtCount(...) PhpHypoAdaptor_getAddCtCount(PhpHypoAdaptor self) -> int
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getAddCts(...) PhpHypoAdaptor_getAddCts(PhpHypoAdaptor self) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getCnst(...) PhpHypoAdaptor_getCnst(PhpHypoAdaptor self) -> PhpSiteConstrainer
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getFd(...) PhpHypoAdaptor_getFd(PhpHypoAdaptor self) -> std::vector< 
      PhpFeatureDefinition,std::allocator< PhpFeatureDefinition > 
      >
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getFragCount(...) PhpHypoAdaptor_getFragCount(PhpHypoAdaptor self) -> int
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getFragCts(...) PhpHypoAdaptor_getFragCts(PhpHypoAdaptor self) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getFragMap(...) PhpHypoAdaptor_getFragMap(PhpHypoAdaptor self) -> 
      SwigVectorIntVector
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getFragSites(...) PhpHypoAdaptor_getFragSites(PhpHypoAdaptor self) -> 
      std::vector< std::vector< PhpSite,std::allocator< PhpSite 
      > >,std::allocator< std::vector< 
      PhpSite,std::allocator< PhpSite > > > >
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getHypoCt(...) PhpHypoAdaptor_getHypoCt(PhpHypoAdaptor self) -> MM_Index
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getHypoID(...) PhpHypoAdaptor_getHypoID(PhpHypoAdaptor self) -> std::string
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getHypoSites(...) PhpHypoAdaptor_getHypoSites(PhpHypoAdaptor self, bool wantProj=False)
      -> std::vector< PhpSite,std::allocator< PhpSite > >
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getIvol(...) PhpHypoAdaptor_getIvol(PhpHypoAdaptor self) -> PhpExclVol
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getMask(...) PhpHypoAdaptor_getMask(PhpHypoAdaptor self) -> PhpSiteMask
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getProp(...) PhpHypoAdaptor_getProp(PhpHypoAdaptor self, std::string const & 
      propName) -> std::string
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getQsar(...) PhpHypoAdaptor_getQsar(PhpHypoAdaptor self) -> PhpQSAR
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getRad(...) PhpHypoAdaptor_getRad(PhpHypoAdaptor self) -> PhpFeatureData
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getRefCt(...) PhpHypoAdaptor_getRefCt(PhpHypoAdaptor self) -> MM_Index
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getRefSites(...) PhpHypoAdaptor_getRefSites(PhpHypoAdaptor self, bool wantProj=False) 
      -> std::vector< PhpSite,std::allocator< PhpSite > >
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getRules(...) PhpHypoAdaptor_getRules(PhpHypoAdaptor self) -> PhpFeatureRules
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getSiteCount(...) PhpHypoAdaptor_getSiteCount(PhpHypoAdaptor self) -> int
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getSiteTypes(...) PhpHypoAdaptor_getSiteTypes(PhpHypoAdaptor self) -> std::string
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getTol(...) PhpHypoAdaptor_getTol(PhpHypoAdaptor self) -> PhpDeltaHypo
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_getXvol(...) PhpHypoAdaptor_getXvol(PhpHypoAdaptor self) -> PhpExclVol
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasAddCts(...) PhpHypoAdaptor_hasAddCts(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasCnst(...) PhpHypoAdaptor_hasCnst(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasFrag(...) PhpHypoAdaptor_hasFrag(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasIvol(...) PhpHypoAdaptor_hasIvol(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasMask(...) PhpHypoAdaptor_hasMask(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasQsar(...) PhpHypoAdaptor_hasQsar(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasRad(...) PhpHypoAdaptor_hasRad(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasRefCt(...) PhpHypoAdaptor_hasRefCt(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasRules(...) PhpHypoAdaptor_hasRules(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasTol(...) PhpHypoAdaptor_hasTol(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_hasXvol(...) PhpHypoAdaptor_hasXvol(PhpHypoAdaptor self) -> bool
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_save(...) PhpHypoAdaptor_save(PhpHypoAdaptor self, std::string const & 
      hypoID, bool overwrite)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_setFrag(...) PhpHypoAdaptor_setFrag(PhpHypoAdaptor self, SwigIntVector fragCts, std::vector< std::vector< PhpSite,std::allocator< PhpSite > >,std::allocator< std::vector< PhpSite,std::allocator< PhpSite > > > > const & fragSites, ...
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_setHypoID(...) PhpHypoAdaptor_setHypoID(PhpHypoAdaptor self, std::string const &
      hypoID)
 |  |  | 
    |  | 
        
          | PhpHypoAdaptor_swiginit(...) |  |  | 
    |  | 
        
          | PhpHypoAdaptor_swigregister(...) |  |  | 
    |  | 
        
          | PhpHypoAdaptor_writeSummary(...) PhpHypoAdaptor_writeSummary(PhpHypoAdaptor self, std::ostream & 
      os)
 |  |  | 
    |  | 
        
          | PhpIntCoord_atoms_get(...) PhpIntCoord_atoms_get(PhpIntCoord self) -> SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpIntCoord_atoms_set(...) PhpIntCoord_atoms_set(PhpIntCoord self, SwigSizetVector atoms)
 |  |  | 
    |  | 
        
          | PhpIntCoord_coords_get(...) PhpIntCoord_coords_get(PhpIntCoord self) -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpIntCoord_coords_set(...) PhpIntCoord_coords_set(PhpIntCoord self, SwigDoubleVector coords)
 |  |  | 
    |  | 
        
          | PhpIntCoord_swiginit(...) |  |  | 
    |  | 
        
          | PhpIntCoord_swigregister(...) |  |  | 
    |  | 
        
          | PhpProject_addLigands(...) PhpProject_addLigands(PhpProject self, std::string const & projectName, std::string const & inFile, bool connect, ...
 |  |  | 
    |  | 
        
          | PhpProject_afterStep(...) PhpProject_afterStep(PhpProject self, std::string const & 
      proposedStep) -> bool
 |  |  | 
    |  | 
        
          | PhpProject_alignLigands(...) PhpProject_alignLigands(PhpProject self, SwigIntVector ligandIDs, std::string const & hypoID, double deltaDist=2.0, ...
 |  |  | 
    |  | 
        
          | PhpProject_assignActives(...) PhpProject_assignActives(PhpProject self, double minAct)
 |  |  | 
    |  | 
        
          | PhpProject_assignDefaultGroups(...) PhpProject_assignDefaultGroups(PhpProject self)
 |  |  | 
    |  | 
        
          | PhpProject_assignGroups(...) PhpProject_assignGroups(PhpProject self, SwigStringVector titles) 
      -> SwigVectorIntVector
 |  |  | 
    |  | 
        
          | PhpProject_assignInactives(...) PhpProject_assignInactives(PhpProject self, double maxAct)
 |  |  | 
    |  | 
        
          | PhpProject_assignQsarSet(...) PhpProject_assignQsarSet(PhpProject self, int numTrain, int seed=0, 
      bool usePharmSet=False, bool sortByActivity=False)
 |  |  | 
    |  | 
        
          | PhpProject_beforeStep(...) PhpProject_beforeStep(PhpProject self, std::string const & 
      proposedStep) -> bool
 |  |  | 
    |  | 
        
          | PhpProject_buildQsarModel(...) PhpProject_buildQsarModel(PhpProject self, std::string const & inFile, std::string const & actProp, std::string const & qsarSetProp, ...
 |  |  | 
    |  | 
        
          | PhpProject_closeProject(...) PhpProject_closeProject(PhpProject self)
 |  |  | 
    |  | 
        
          | PhpProject_combineFragmentCts(...) PhpProject_combineFragmentCts(PhpProject self, SwigIntVector 
      fragments) -> MM_Index
 |  |  | 
    |  | 
        
          | PhpProject_combineFragmentSites(...) PhpProject_combineFragmentSites(PhpProject self, SwigIntVector fragCts, std::vector< std::vector< PhpSite,std::allocator< PhpSite > >,std::allocator< std::vector< PhpSite,std::allocator< PhpSite > > > > const & fragSites, ...
 |  |  | 
    |  | 
        
          | PhpProject_commitMasterData(...) PhpProject_commitMasterData(PhpProject self, bool writeFirst=False)
 |  |  | 
    |  | 
        
          | PhpProject_compareFeatureDef(...) PhpProject_compareFeatureDef(PhpProject self, std::string const &
      fdFile1, std::string const & fdFile2) -> int
 |  |  | 
    |  | 
        
          | PhpProject_copyFile(...) PhpProject_copyFile(PhpProject self, std::string const & baseName, std::string const & fromDir, std::string const & toDir, ...
 |  |  | 
    |  | 
        
          | PhpProject_createSites(...) PhpProject_createSites(PhpProject self, std::string const & 
      jobName, bool save)
 |  |  | 
    |  | 
        
          | PhpProject_deleteHypotheses(...) PhpProject_deleteHypotheses(PhpProject self, SwigStringVector 
      hypoIDs)
 |  |  | 
    |  | 
        
          | PhpProject_deleteLigands(...) PhpProject_deleteLigands(PhpProject self, SwigIntVector ligandIDs)
 |  |  | 
    |  | 
        
          | PhpProject_deleteQsarModels(...) PhpProject_deleteQsarModels(PhpProject self, SwigStringVector 
      hypoIDs)
 |  |  | 
    |  | 
        
          | PhpProject_expActivity(...) PhpProject_expActivity(PhpProject self)
 |  |  | 
    |  | 
        
          | PhpProject_getAbsolutePath(...) PhpProject_getAbsolutePath(PhpProject self, std::string const & 
      path) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_getActivity(...) PhpProject_getActivity(PhpProject self, int ligandID, double 
      missingValue=0.0) -> double
 |  |  | 
    |  | 
        
          | PhpProject_getActivityMissing(...) PhpProject_getActivityMissing(PhpProject self, int ligandID) -> 
      bool
 |  |  | 
    |  | 
        
          | PhpProject_getBindingModes(...) PhpProject_getBindingModes(PhpProject self, int numModes, 
      SwigStringVector hypoIDs) -> SwigVectorIntVector
 |  |  | 
    |  | 
        
          | PhpProject_getConformer(...) PhpProject_getConformer(PhpProject self, int ligandID, int confIndex)
      -> MM_Index
 |  |  | 
    |  | 
        
          | PhpProject_getConformerCount(...) PhpProject_getConformerCount(PhpProject self, int ligandID) -> int
 |  |  | 
    |  | 
        
          | PhpProject_getConformers(...) PhpProject_getConformers(PhpProject self, int ligandID) -> 
      SwigIntVector
 |  |  | 
    |  | 
        
          | PhpProject_getDbID(...) PhpProject_getDbID(PhpProject self, int ligandID) -> int
 |  |  | 
    |  | 
        
          | PhpProject_getDefaultFdFile(...) PhpProject_getDefaultFdFile(PhpProject self) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_getDefaultFeatureDef(...) PhpProject_getDefaultFeatureDef(PhpProject self) -> 
      std::vector< PhpFeatureDefinition,std::allocator< 
      PhpFeatureDefinition > >
 |  |  | 
    |  | 
        
          | PhpProject_getDefaultFeatureEquiv(...) PhpProject_getDefaultFeatureEquiv(PhpProject self) -> 
      SwigStringVector
 |  |  | 
    |  | 
        
          | PhpProject_getDefaultFeatureFreq(...) PhpProject_getDefaultFeatureFreq(PhpProject self) -> 
      PhpFeatureData
 |  |  | 
    |  | 
        
          | PhpProject_getDefaultFeatureRadii(...) PhpProject_getDefaultFeatureRadii(PhpProject self) -> 
      PhpFeatureData
 |  |  | 
    |  | 
        
          | PhpProject_getDefaultFeatureTol(...) PhpProject_getDefaultFeatureTol(PhpProject self) -> PhpFeatureData
 |  |  | 
    |  | 
        
          | PhpProject_getDefaultSiteMasks(...) PhpProject_getDefaultSiteMasks(PhpProject self) -> std::vector<
      PhpSiteMask,std::allocator< PhpSiteMask > >
 |  |  | 
    |  | 
        
          | PhpProject_getEnergyProp(...) PhpProject_getEnergyProp(PhpProject self) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_getFdFile(...) PhpProject_getFdFile(PhpProject self) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_getFeatureDef(...) PhpProject_getFeatureDef(PhpProject self, std::string const & 
      fdFile) -> std::vector< PhpFeatureDefinition,std::allocator<
      PhpFeatureDefinition > >
 |  |  | 
    |  | 
        
          | PhpProject_getFeatureDefFromProj(...) PhpProject_getFeatureDefFromProj(PhpProject self) -> 
      std::vector< PhpFeatureDefinition,std::allocator< 
      PhpFeatureDefinition > >
 |  |  | 
    |  | 
        
          | PhpProject_getFeatureEquiv(...) PhpProject_getFeatureEquiv(PhpProject self) -> SwigStringVector
 |  |  | 
    |  | 
        
          | PhpProject_getFeatureFreq(...) PhpProject_getFeatureFreq(PhpProject self) -> PhpFeatureData
 |  |  | 
    |  | 
        
          | PhpProject_getFeatureRadii(...) PhpProject_getFeatureRadii(PhpProject self) -> PhpFeatureData
 |  |  | 
    |  | 
        
          | PhpProject_getFeatureTol(...) PhpProject_getFeatureTol(PhpProject self) -> PhpFeatureData
 |  |  | 
    |  | 
        
          | PhpProject_getGroup(...) PhpProject_getGroup(PhpProject self, int ligandID) -> int
 |  |  | 
    | int | 
        
          | PhpProject_getGroupCount() PhpProject_getGroupCount(PhpProject self, SwigIntVector ligandIDs) 
      -> int
 |  |  | 
    |  | 
        
          | PhpProject_getHypo(...) PhpProject_getHypo(PhpProject self, std::string const & hypoID, 
      bool qsar=False) -> PhpHypoAdaptor
 |  |  | 
    |  | 
        
          | PhpProject_getHypoAlignments(...) PhpProject_getHypoAlignments(PhpProject self, std::string const &
      hypoID, bool wantMisses=False) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpProject_getHypoFmt(...) PhpProject_getHypoFmt(PhpProject self) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_getHypoIDs(...) PhpProject_getHypoIDs(PhpProject self, bool fullPath=False) -> 
      SwigStringVector
 |  |  | 
    |  | 
        
          | PhpProject_getHypoMatches(...) PhpProject_getHypoMatches(PhpProject self, std::string const & 
      hypoID, bool wantMisses=False) -> SwigVectorStringVector
 |  |  | 
    |  | 
        
          | PhpProject_getHypoScores(...) PhpProject_getHypoScores(PhpProject self, std::string const & 
      hypoID) -> SwigStringVector
 |  |  | 
    |  | 
        
          | PhpProject_getHypoSites(...) PhpProject_getHypoSites(PhpProject self, std::string const & 
      hypoID, bool wantProj=False) -> std::vector< 
      PhpSite,std::allocator< PhpSite > >
 |  |  | 
    |  | 
        
          | PhpProject_getHypoSitesStrings(...) PhpProject_getHypoSitesStrings(PhpProject self, std::string const 
      & hypoID, bool wantProj=False) -> SwigVectorStringVector
 |  |  | 
    |  | 
        
          | PhpProject_getInFileType(...) PhpProject_getInFileType(PhpProject self, std::string const & 
      fileName) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_getInactiveAlignments(...) PhpProject_getInactiveAlignments(PhpProject self, std::string const 
      & hypoID, bool allowMissing=False) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpProject_getLigand(...) PhpProject_getLigand(PhpProject self, int ligandID) -> PhpLigand
 |  |  | 
    |  | 
        
          | PhpProject_getLigandCount(...) PhpProject_getLigandCount(PhpProject self, std::string const & 
      category) -> int
 |  |  | 
    |  | 
        
          | PhpProject_getLigandIDs(...) PhpProject_getLigandIDs(PhpProject self, std::string const & 
      category) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpProject_getMatchedSites(...) PhpProject_getMatchedSites(PhpProject self, MM_Index ctHandle, std::vector< PhpFeatureDefinition,std::allocator< PhpFeatureDefinition > > const & fd, ...
 |  |  | 
    |  | 
        
          | PhpProject_getMatchedSitesStrings(...) PhpProject_getMatchedSitesStrings(PhpProject self, MM_Index ctHandle, std::vector< PhpFeatureDefinition,std::allocator< PhpFeatureDefinition > > const & fd, ...
 |  |  | 
    |  | 
        
          | PhpProject_getMolSites(...) PhpProject_getMolSites(PhpProject self, MM_Index ctHandle, std::vector< PhpFeatureDefinition,std::allocator< PhpFeatureDefinition > > const & fd, ...
 |  |  | 
    |  | 
        
          | PhpProject_getMolSitesAtoms(...) PhpProject_getMolSitesAtoms(PhpProject self, MM_Index ctHandle, std::vector< PhpFeatureDefinition,std::allocator< PhpFeatureDefinition > > const & fd, ...
 |  |  | 
    |  | 
        
          | PhpProject_getMolSitesStrings(...) PhpProject_getMolSitesStrings(PhpProject self, MM_Index ctHandle, std::vector< PhpFeatureDefinition,std::allocator< PhpFeatureDefinition > > const & fd, ...
 |  |  | 
    |  | 
        
          | PhpProject_getMustMatch(...) PhpProject_getMustMatch(PhpProject self, int ligandID) -> bool
 |  |  | 
    |  | 
        
          | PhpProject_getPatternMatches(...) PhpProject_getPatternMatches(PhpProject self, MM_Index ctHandle, 
      std::vector< PhpFeatureDefinition,std::allocator< 
      PhpFeatureDefinition > > const & fd) -> 
      SwigVectorIntVector
 |  |  | 
    |  | 
        
          | PhpProject_getPharmSet(...) PhpProject_getPharmSet(PhpProject self, int ligandID) -> 
      std::string
 |  |  | 
    |  | 
        
          | PhpProject_getProjectPath(...) PhpProject_getProjectPath(PhpProject self, bool orig=False) -> 
      std::string
 |  |  | 
    |  | 
        
          | PhpProject_getQsarAlignments(...) PhpProject_getQsarAlignments(PhpProject self, std::string const &
      hypoID) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarCount(...) PhpProject_getQsarCount(PhpProject self, std::string const & 
      category) -> int
 |  |  | 
    |  | 
        
          | PhpProject_getQsarHypoIDs(...) PhpProject_getQsarHypoIDs(PhpProject self, bool fullPath=False) ->
      SwigStringVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarIDs(...) PhpProject_getQsarIDs(PhpProject self, std::string const & 
      category) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModel(...) PhpProject_getQsarModel(PhpProject self, std::string const & 
      qsarFile, bool fromProject=False) -> PhpQSAR
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelClassDescription(...) PhpProject_getQsarModelClassDescription(PhpProject self, PhpQSAR 
      qsar, std::string const & qsarClass) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelClassFraction(...) PhpProject_getQsarModelClassFraction(PhpProject self, PhpQSAR qsar, 
      std::string const & qsarClass, int numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelClasses(...) PhpProject_getQsarModelClasses(PhpProject self, PhpQSAR qsar) -> 
      SwigStringVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelCoeff(...) getQsarModelCoeff(PhpQSAR qsar, int numFactors, bool 
      combineClasses=False) -> SwigDoubleVector 
      getQsarModelCoeff(PhpQSAR qsar, int numFactors, std::string const 
      & qsarClass) -> SwigDoubleVector 
      PhpProject_getQsarModelCoeff(PhpProject self, PhpQSAR qsar, int 
      numFactors, SwigStringVector qsarClasses, bool combineClasses=False) 
      -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelCoeffRange(...) getQsarModelCoeffRange(PhpQSAR qsar, int numFactors, bool 
      combineClasses=False) -> SwigDoubleVector 
      getQsarModelCoeffRange(PhpQSAR qsar, int numFactors, std::string 
      const & qsarClass) -> SwigDoubleVector 
      PhpProject_getQsarModelCoeffRange(PhpProject self, PhpQSAR qsar, int 
      numFactors, SwigStringVector qsarClasses, bool combineClasses=False) 
      -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelFactorCount(...) PhpProject_getQsarModelFactorCount(PhpProject self, PhpQSAR qsar) 
      -> int
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelGridLimits(...) PhpProject_getQsarModelGridLimits(PhpProject self, PhpQSAR qsar) 
      -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelGridSpacing(...) PhpProject_getQsarModelGridSpacing(PhpProject self, PhpQSAR qsar) 
      -> double
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelRegF(...) PhpProject_getQsarModelRegF(PhpProject self, PhpQSAR qsar, int 
      numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelRegP(...) PhpProject_getQsarModelRegP(PhpProject self, PhpQSAR qsar, int 
      numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelRegRsqr(...) PhpProject_getQsarModelRegRsqr(PhpProject self, PhpQSAR qsar, int 
      numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelRegRsqrCv(...) PhpProject_getQsarModelRegRsqrCv(PhpProject self, PhpQSAR qsar, int 
      numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelRegRsqrScramble(...) PhpProject_getQsarModelRegRsqrScramble(PhpProject self, PhpQSAR qsar,
      int numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelRegSD(...) PhpProject_getQsarModelRegSD(PhpProject self, PhpQSAR qsar, int 
      numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelRegStability(...) PhpProject_getQsarModelRegStability(PhpProject self, PhpQSAR qsar, 
      int numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelStyle(...) PhpProject_getQsarModelStyle(PhpProject self, PhpQSAR qsar) -> 
      std::string
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelVolBitCount(...) getQsarModelVolBitCount(PhpQSAR qsar) -> int 
      getQsarModelVolBitCount(PhpQSAR qsar, std::string const & 
      qsarClass) -> int PhpProject_getQsarModelVolBitCount(PhpProject 
      self, PhpQSAR qsar, SwigStringVector qsarClasses) -> int
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelVolClasses(...) PhpProject_getQsarModelVolClasses(PhpProject self, PhpQSAR qsar) 
      -> SwigStringVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelVolCoords(...) getQsarModelVolCoords(PhpQSAR qsar) -> SwigVectorDoubleVector 
      getQsarModelVolCoords(PhpQSAR qsar, std::string const & 
      qsarClass) -> SwigVectorDoubleVector 
      PhpProject_getQsarModelVolCoords(PhpProject self, PhpQSAR qsar, 
      SwigStringVector qsarClasses) -> SwigVectorDoubleVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarModelVolOnBits(...) getQsarModelVolOnBits(PhpQSAR qsar, MM_Index ctHandle) -> 
      SwigIntVector getQsarModelVolOnBits(PhpQSAR qsar, MM_Index ctHandle, 
      std::string const & qsarClass) -> SwigIntVector 
      PhpProject_getQsarModelVolOnBits(PhpProject self, PhpQSAR qsar, 
      MM_Index ctHandle, SwigStringVector qsarClasses) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarProps(...) PhpProject_getQsarProps(PhpProject self, MM_Index & ctHandle) 
      -> SwigStringVector
 |  |  | 
    |  | 
        
          | PhpProject_getQsarSet(...) PhpProject_getQsarSet(PhpProject self, int ligandID) -> 
      std::string
 |  |  | 
    |  | 
        
          | PhpProject_getQsarStats(...) PhpProject_getQsarStats(PhpProject self, std::string const & 
      hypoID) -> SwigVectorDoubleVector
 |  |  | 
    |  | 
        
          | PhpProject_getRuntimeName(...) PhpProject_getRuntimeName(PhpProject self, std::string const & 
      fileName) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_getSiteFragment(...) PhpProject_getSiteFragment(PhpProject self, std::string const & 
      siteType, SwigDoubleVector xyz1, SwigDoubleVector xyz2) -> 
      MM_Index
 |  |  | 
    |  | 
        
          | PhpProject_getSiteMappings(...) PhpProject_getSiteMappings(PhpProject self, PhpSite site, std::vector< PhpSite,std::allocator< PhpSite > > const & pool, ...
 |  |  | 
    |  | 
        
          | PhpProject_getSiteMasks(...) PhpProject_getSiteMasks(PhpProject self, bool ignoreDiffs=False) 
      -> std::vector< PhpSiteMask,std::allocator< PhpSiteMask >
      >
 |  |  | 
    |  | 
        
          | PhpProject_getSitesConformer(...) PhpProject_getSitesConformer(PhpProject self, int ligandID, int 
      confIndex) -> std::vector< PhpSite,std::allocator< PhpSite 
      > >
 |  |  | 
    |  | 
        
          | PhpProject_getSitesConformers(...) PhpProject_getSitesConformers(PhpProject self, int ligandID) -> 
      std::vector< std::vector< PhpSite,std::allocator< PhpSite 
      > >,std::allocator< std::vector< 
      PhpSite,std::allocator< PhpSite > > > >
 |  |  | 
    |  | 
        
          | PhpProject_getSlash(...) PhpProject_getSlash(PhpProject self) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_getStep(...) PhpProject_getStep(PhpProject self) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_getTitle(...) PhpProject_getTitle(PhpProject self, int ligandID) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_haveMasterDiffs(...) PhpProject_haveMasterDiffs(PhpProject self, bool ignoreQsar=False) 
      -> bool
 |  |  | 
    |  | 
        
          | PhpProject_isValidArchiveName(...) PhpProject_isValidArchiveName(PhpProject self, std::string const 
      & projectArchive) -> bool
 |  |  | 
    |  | 
        
          | PhpProject_isValidProjectName(...) PhpProject_isValidProjectName(PhpProject self, std::string const 
      & projectName) -> bool
 |  |  | 
    |  | 
        
          | PhpProject_logActivity(...) PhpProject_logActivity(PhpProject self)
 |  |  | 
    |  | 
        
          | PhpProject_mapSites(...) PhpProject_mapSites(PhpProject self, MM_Index ctHandle, std::vector< PhpFeatureDefinition,std::allocator< PhpFeatureDefinition > > const & fd, ...
 |  |  | 
    |  | 
        
          | PhpProject_needSyncFeatureDef(...) PhpProject_needSyncFeatureDef(PhpProject self) -> bool
 |  |  | 
    |  | 
        
          | PhpProject_newProject(...) PhpProject_newProject(PhpProject self, std::string const & projectName, std::string const & inFile, std::string const & fdFile, ...
 |  |  | 
    |  | 
        
          | PhpProject_normalizeFeatureEquiv(...) PhpProject_normalizeFeatureEquiv(PhpProject self, SwigStringVector 
      featureEquiv) -> SwigStringVector
 |  |  | 
    |  | 
        
          | PhpProject_openProject(...) PhpProject_openProject(PhpProject self, std::string const & 
      projectName, bool checkMaster=False)
 |  |  | 
    |  | 
        
          | PhpProject_restoreMasterData(...) PhpProject_restoreMasterData(PhpProject self)
 |  |  | 
    |  | 
        
          | PhpProject_reviseDatabase(...) PhpProject_reviseDatabase(PhpProject self, std::string const & jobName, std::string const & reviseOptions, ...
 |  |  | 
    |  | 
        
          | PhpProject_sampleActives(...) PhpProject_sampleActives(PhpProject self, int sampleSize, bool 
      includeNone=False)
 |  |  | 
    |  | 
        
          | PhpProject_saveFeatureDef(...) PhpProject_saveFeatureDef(PhpProject self, std::vector< 
      PhpFeatureDefinition,std::allocator< PhpFeatureDefinition > 
      > const & fd)
 |  |  | 
    |  | 
        
          | PhpProject_saveFeatureDefToFile(...) PhpProject_saveFeatureDefToFile(PhpProject self, std::vector< PhpFeatureDefinition,std::allocator< PhpFeatureDefinition > > const & fd, ...
 |  |  | 
    |  | 
        
          | PhpProject_saveFeatureEquiv(...) PhpProject_saveFeatureEquiv(PhpProject self, SwigStringVector 
      featureEquiv)
 |  |  | 
    |  | 
        
          | PhpProject_saveFeatureFreq(...) PhpProject_saveFeatureFreq(PhpProject self, PhpFeatureData 
      featureFreq)
 |  |  | 
    |  | 
        
          | PhpProject_saveFeatureRadii(...) PhpProject_saveFeatureRadii(PhpProject self, PhpFeatureData 
      featureRadii)
 |  |  | 
    |  | 
        
          | PhpProject_saveFeatureTol(...) PhpProject_saveFeatureTol(PhpProject self, PhpFeatureData featureTol)
 |  |  | 
    |  | 
        
          | PhpProject_saveFind(...) PhpProject_saveFind(PhpProject self, std::string const & jobName)
 |  |  | 
    |  | 
        
          | PhpProject_saveMasterData(...) PhpProject_saveMasterData(PhpProject self)
 |  |  | 
    |  | 
        
          | PhpProject_saveQsar(...) PhpProject_saveQsar(PhpProject self, std::string const & jobName)
 |  |  | 
    |  | 
        
          | PhpProject_saveSiteMasks(...) PhpProject_saveSiteMasks(PhpProject self, std::vector< 
      PhpSiteMask,std::allocator< PhpSiteMask > > const & 
      siteMasks)
 |  |  | 
    |  | 
        
          | PhpProject_scaleActivity(...) PhpProject_scaleActivity(PhpProject self, double scale)
 |  |  | 
    |  | 
        
          | PhpProject_setActivity(...) PhpProject_setActivity(PhpProject self, int ligandID, double 
      activity)
 |  |  | 
    |  | 
        
          | PhpProject_setActivityMissing(...) PhpProject_setActivityMissing(PhpProject self, int ligandID)
 |  |  | 
    |  | 
        
          | PhpProject_setGroup(...) PhpProject_setGroup(PhpProject self, int ligandID, int group)
 |  |  | 
    |  | 
        
          | PhpProject_setMustMatch(...) PhpProject_setMustMatch(PhpProject self, int ligandID, bool 
      mustMatch)
 |  |  | 
    |  | 
        
          | PhpProject_setPharmSet(...) PhpProject_setPharmSet(PhpProject self, int ligandID, std::string 
      const & pharmSet)
 |  |  | 
    |  | 
        
          | PhpProject_setQsarSet(...) PhpProject_setQsarSet(PhpProject self, int ligandID, std::string 
      const & qsarSet)
 |  |  | 
    |  | 
        
          | PhpProject_setupFind(...) PhpProject_setupFind(PhpProject self, std::string const & 
      directory) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_setupQsar(...) PhpProject_setupQsar(PhpProject self, std::string const & 
      directory) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_siteToStrings(...) PhpProject_siteToStrings(PhpProject self, PhpSite site) -> 
      SwigStringVector
 |  |  | 
    |  |  | 
    |  | 
        
          | PhpProject_swigregister(...) |  |  | 
    |  | 
        
          | PhpProject_syncFeatureDef(...) PhpProject_syncFeatureDef(PhpProject self)
 |  |  | 
    |  | 
        
          | PhpProject_testQsarModel(...) PhpProject_testQsarModel(PhpProject self, PhpQSAR qsar, std::string const & inFile, std::string const & actProp, ...
 |  |  | 
    |  | 
        
          | PhpProject_unzipArchive(...) PhpProject_unzipArchive(PhpProject self, std::string const & 
      directory, std::string const & archive)
 |  |  | 
    |  | 
        
          | PhpProject_unzipProject(...) PhpProject_unzipProject(PhpProject self, std::string const & 
      directory, std::string const & projectArchive) -> std::string
 |  |  | 
    |  | 
        
          | PhpProject_writeHypoFiles(...) PhpProject_writeHypoFiles(PhpProject self, std::string const & hypoID, MM_Index refCt, std::vector< PhpSite,std::allocator< PhpSite > > const & hypoSites, ...
 |  |  | 
    |  | 
        
          | PhpProject_writeSummary(...) PhpProject_writeSummary(PhpProject self, std::ostream & os)
 |  |  | 
    |  | 
        
          | PhpProject_zipDirectory(...) PhpProject_zipDirectory(PhpProject self, std::string const & 
      directory, std::string const & archive)
 |  |  | 
    |  | 
        
          | PhpProject_zipProject(...) PhpProject_zipProject(PhpProject self, std::string const & directory, std::string const & projectName, ...
 |  |  | 
    |  | 
        
          | PhpQSARModel_atomClasses_get(...) PhpQSARModel_atomClasses_get(PhpQSARModel self) -> 
      SwigStringVector
 |  |  | 
    |  | 
        
          | PhpQSARModel_atomClasses_set(...) PhpQSARModel_atomClasses_set(PhpQSARModel self, SwigStringVector 
      atomClasses)
 |  |  | 
    |  | 
        
          | PhpQSARModel_classFractions_get(...) PhpQSARModel_classFractions_get(PhpQSARModel self) -> std::map<
      std::string,std::vector< double,std::allocator< double > 
      >,std::less< std::string >,std::allocator< std::pair< 
      std::string const,std::vector< double,std::allocator< double 
      > > > > > *
 |  |  | 
    |  | 
        
          | PhpQSARModel_classFractions_set(...) PhpQSARModel_classFractions_set(PhpQSARModel self, std::map< 
      std::string,std::vector< double,std::allocator< double > 
      >,std::less< std::string >,std::allocator< std::pair< 
      std::string const,std::vector< double,std::allocator< double 
      > > > > > * classFractions)
 |  |  | 
    |  | 
        
          | PhpQSARModel_featureRadii_get(...) PhpQSARModel_featureRadii_get(PhpQSARModel self) -> PhpFeatureData
 |  |  | 
    |  | 
        
          | PhpQSARModel_featureRadii_set(...) PhpQSARModel_featureRadii_set(PhpQSARModel self, PhpFeatureData 
      featureRadii)
 |  |  | 
    |  | 
        
          | PhpQSARModel_gridSpacing_get(...) PhpQSARModel_gridSpacing_get(PhpQSARModel self) -> double
 |  |  | 
    |  | 
        
          | PhpQSARModel_gridSpacing_set(...) PhpQSARModel_gridSpacing_set(PhpQSARModel self, double gridSpacing)
 |  |  | 
    |  | 
        
          | PhpQSARModel_numBitsByClass_get(...) PhpQSARModel_numBitsByClass_get(PhpQSARModel self) -> std::map<
      std::string,size_t,std::less< std::string >,std::allocator< 
      std::pair< std::string const,size_t > > > *
 |  |  | 
    |  | 
        
          | PhpQSARModel_numBitsByClass_set(...) PhpQSARModel_numBitsByClass_set(PhpQSARModel self, std::map< 
      std::string,size_t,std::less< std::string >,std::allocator< 
      std::pair< std::string const,size_t > > > * 
      numBitsByClass)
 |  |  | 
    |  | 
        
          | PhpQSARModel_pls_get(...) PhpQSARModel_pls_get(PhpQSARModel self) -> PhpPLS
 |  |  | 
    |  | 
        
          | PhpQSARModel_pls_set(...) PhpQSARModel_pls_set(PhpQSARModel self, PhpPLS pls)
 |  |  | 
    |  | 
        
          | PhpQSARModel_rsqrScramble_get(...) PhpQSARModel_rsqrScramble_get(PhpQSARModel self) -> 
      SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpQSARModel_rsqrScramble_set(...) PhpQSARModel_rsqrScramble_set(PhpQSARModel self, SwigDoubleVector 
      rsqrScramble)
 |  |  | 
    |  | 
        
          | PhpQSARModel_swiginit(...) |  |  | 
    |  | 
        
          | PhpQSARModel_swigregister(...) |  |  | 
    |  | 
        
          | PhpQSARModel_volumeNames_get(...) PhpQSARModel_volumeNames_get(PhpQSARModel self) -> 
      SwigStringVector
 |  |  | 
    |  | 
        
          | PhpQSARModel_volumeNames_set(...) PhpQSARModel_volumeNames_set(PhpQSARModel self, SwigStringVector 
      volumeNames)
 |  |  | 
    |  | 
        
          | PhpQSARModel_xmax_get(...) PhpQSARModel_xmax_get(PhpQSARModel self) -> double
 |  |  | 
    |  | 
        
          | PhpQSARModel_xmax_set(...) PhpQSARModel_xmax_set(PhpQSARModel self, double xmax)
 |  |  | 
    |  | 
        
          | PhpQSARModel_xmin_get(...) PhpQSARModel_xmin_get(PhpQSARModel self) -> double
 |  |  | 
    |  | 
        
          | PhpQSARModel_xmin_set(...) PhpQSARModel_xmin_set(PhpQSARModel self, double xmin)
 |  |  | 
    |  | 
        
          | PhpQSARModel_ymax_get(...) PhpQSARModel_ymax_get(PhpQSARModel self) -> double
 |  |  | 
    |  | 
        
          | PhpQSARModel_ymax_set(...) PhpQSARModel_ymax_set(PhpQSARModel self, double ymax)
 |  |  | 
    |  | 
        
          | PhpQSARModel_ymin_get(...) PhpQSARModel_ymin_get(PhpQSARModel self) -> double
 |  |  | 
    |  | 
        
          | PhpQSARModel_ymin_set(...) PhpQSARModel_ymin_set(PhpQSARModel self, double ymin)
 |  |  | 
    |  | 
        
          | PhpQSARModel_zmax_get(...) PhpQSARModel_zmax_get(PhpQSARModel self) -> double
 |  |  | 
    |  | 
        
          | PhpQSARModel_zmax_set(...) PhpQSARModel_zmax_set(PhpQSARModel self, double zmax)
 |  |  | 
    |  | 
        
          | PhpQSARModel_zmin_get(...) PhpQSARModel_zmin_get(PhpQSARModel self) -> double
 |  |  | 
    |  | 
        
          | PhpQSARModel_zmin_set(...) PhpQSARModel_zmin_set(PhpQSARModel self, double zmin)
 |  |  | 
    |  | 
        
          | PhpQSAR_clear(...) PhpQSAR_clear(PhpQSAR self)
 |  |  | 
    |  | 
        
          | PhpQSAR_clearDataSet(...) PhpQSAR_clearDataSet(PhpQSAR self)
 |  |  | 
    |  | 
        
          | PhpQSAR_clearModel(...) PhpQSAR_clearModel(PhpQSAR self)
 |  |  | 
    |  | 
        
          | PhpQSAR_computeRCorr(...) PhpQSAR_computeRCorr(PhpQSAR self, SwigDoubleVector x, 
      SwigDoubleVector y) -> double
 |  |  | 
    |  | 
        
          | PhpQSAR_computeStats(...) PhpQSAR_computeStats(PhpQSAR self, SwigDoubleVector yobs, SwigDoubleVector ypred, double & varObs, double & varPred, ...
 |  |  | 
    |  | 
        
          | PhpQSAR_createModel(...) createModel(std::vector< PhpMolModel,std::allocator< PhpMolModel > > const & molecules, SwigDoubleVector activities, ...
 |  |  | 
    |  | 
        
          | PhpQSAR_crossValidateModel(...) crossValidateModel(size_t n, size_t randSeed, SwigVectorDoubleVector yhatLNO, SwigDoubleVector rsqrYobs, ...
 |  |  | 
    |  | 
        
          | PhpQSAR_duplexDataSet(...) duplexDataSet(size_t numTotal, size_t numTrain, size_t & randomSeed, SwigSizetVector trainList, ...
 |  |  | 
    |  | 
        
          | PhpQSAR_exportModel(...) PhpQSAR_exportModel(PhpQSAR self, std::string const & modelFile) 
      -> int
 |  |  | 
    |  | 
        
          | PhpQSAR_exportModelToStream(...) PhpQSAR_exportModelToStream(PhpQSAR self, std::ostream & 
      modelStream)
 |  |  | 
    |  | 
        
          | PhpQSAR_getActivities(...) PhpQSAR_getActivities(PhpQSAR self) -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpQSAR_getAtomClassDescription(...) PhpQSAR_getAtomClassDescription(PhpQSAR self, std::string const &
      atomClass) -> std::string
 |  |  | 
    |  | 
        
          | PhpQSAR_getAtomClasses(...) PhpQSAR_getAtomClasses(PhpQSAR self) -> SwigStringVector
 |  |  | 
    |  | 
        
          | PhpQSAR_getClassFraction(...) PhpQSAR_getClassFraction(PhpQSAR self, std::string const & 
      atomClass, size_t numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpQSAR_getModel(...) PhpQSAR_getModel(PhpQSAR self) -> PhpQSARModel
 |  |  | 
    |  | 
        
          | PhpQSAR_getModelType(...) PhpQSAR_getModelType(PhpQSAR self) -> std::string
 |  |  | 
    |  | 
        
          | PhpQSAR_getMoleculeType(...) PhpQSAR_getMoleculeType(PhpQSAR self) -> std::string
 |  |  | 
    |  | 
        
          | PhpQSAR_getMolecules(...) PhpQSAR_getMolecules(PhpQSAR self) -> std::vector< 
      PhpMolModel,std::allocator< PhpMolModel > >
 |  |  | 
    |  | 
        
          | PhpQSAR_getOnBits(...) PhpQSAR_getOnBits(PhpQSAR self, SwigSizetVector bits) -> 
      SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpQSAR_getRegF(...) PhpQSAR_getRegF(PhpQSAR self, size_t numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpQSAR_getRegP(...) PhpQSAR_getRegP(PhpQSAR self, size_t numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpQSAR_getRegRsqr(...) PhpQSAR_getRegRsqr(PhpQSAR self, size_t numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpQSAR_getRegRsqrCv(...) PhpQSAR_getRegRsqrCv(PhpQSAR self, size_t numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpQSAR_getRegRsqrScramble(...) PhpQSAR_getRegRsqrScramble(PhpQSAR self, size_t numFactors) -> 
      double
 |  |  | 
    |  | 
        
          | PhpQSAR_getRegSD(...) PhpQSAR_getRegSD(PhpQSAR self, size_t numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpQSAR_getRegStability(...) PhpQSAR_getRegStability(PhpQSAR self, size_t numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpQSAR_getTestRCorr(...) PhpQSAR_getTestRCorr(PhpQSAR self, size_t numFactors) -> double
 |  |  | 
    |  | 
        
          | PhpQSAR_getTitles(...) PhpQSAR_getTitles(PhpQSAR self) -> SwigStringVector
 |  |  | 
    |  | 
        
          | PhpQSAR_getTvalue(...) PhpQSAR_getTvalue(PhpQSAR self, double p, size_t ndf) -> double
 |  |  | 
    |  | 
        
          | PhpQSAR_getVectSubset(...) PhpQSAR_getVectSubset(PhpQSAR self, SwigDoubleVector v, 
      SwigSizetVector subset) -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpQSAR_getVolAtomClasses(...) PhpQSAR_getVolAtomClasses(PhpQSAR self) -> SwigStringVector
 |  |  | 
    | std::vector< PhpVolCoords,std::allocator< PhpVolCoords > 
      > | 
        
          | PhpQSAR_getVolCoords() getVolCoords(std::string const & atomClass) -> std::vector<
      PhpVolCoords,std::allocator< PhpVolCoords > > 
      PhpQSAR_getVolCoords(PhpQSAR self, SwigStringVector atomClasses) 
      -> std::vector< PhpVolCoords,std::allocator< PhpVolCoords 
      > >
 |  |  | 
    |  | 
        
          | PhpQSAR_getVolOccBits(...) getVolOccBits(PhpMolModel const & molModel) -> SwigSizetVector
      getVolOccBits(size_t imol) -> SwigSizetVector 
      getVolOccBits(PhpMolModel const & molModel, std::string const 
      & atomClass) -> SwigSizetVector getVolOccBits(size_t imol, 
      std::string const & atomClass) -> SwigSizetVector 
      getVolOccBits(PhpMolModel const & molModel, SwigStringVector 
      atomClasses) -> SwigSizetVector PhpQSAR_getVolOccBits(PhpQSAR 
      self, size_t imol, SwigStringVector atomClasses) -> 
      SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpQSAR_getVolRegCoeffs(...) getVolRegCoeffs(size_t numFactors, bool combineAtomClasses=False) 
      -> SwigDoubleVector getVolRegCoeffs(size_t numFactors, std::string
      const & atomClass) -> SwigDoubleVector 
      PhpQSAR_getVolRegCoeffs(PhpQSAR self, size_t numFactors, 
      SwigStringVector atomClasses, bool combineAtomClasses=False) -> 
      SwigDoubleVector
 |  |  | 
    |  | 
        
          | PhpQSAR_importActivities(...) importActivities(char const * actFile) -> int 
      PhpQSAR_importActivities(PhpQSAR self, SwigDoubleVector activities)
 |  |  | 
    |  | 
        
          | PhpQSAR_importModel(...) importModel(std::string const & modelFile) -> int 
      PhpQSAR_importModel(PhpQSAR self, std::istream & modelStream) 
      -> int
 |  |  | 
    |  | 
        
          | PhpQSAR_importMolecules(...) importMolecules(char const * maeFile) -> int 
      PhpQSAR_importMolecules(PhpQSAR self, SwigIntVector ctHandles)
 |  |  | 
    |  | 
        
          | PhpQSAR_importMoleculesAndActivities(...) PhpQSAR_importMoleculesAndActivities(PhpQSAR self, char const * 
      maeFile, char const * activityProperty, double missingActivity=0.0) 
      -> int
 |  |  | 
    |  | 
        
          | PhpQSAR_importPharm(...) importPharm(char const * pharmFile, char const * 
      featureRadiusFile=None) -> int PhpQSAR_importPharm(PhpQSAR self, 
      std::vector< std::vector< PhpSite,std::allocator< PhpSite 
      > >,std::allocator< std::vector< 
      PhpSite,std::allocator< PhpSite > > > > const & 
      pharmVect) -> int
 |  |  | 
    |  | 
        
          | PhpQSAR_numActivities(...) PhpQSAR_numActivities(PhpQSAR self) -> size_t
 |  |  | 
    |  | 
        
          | PhpQSAR_numMolecules(...) PhpQSAR_numMolecules(PhpQSAR self) -> size_t
 |  |  | 
    |  | 
        
          | PhpQSAR_numPLSFactors(...) PhpQSAR_numPLSFactors(PhpQSAR self) -> size_t
 |  |  | 
    | size_t | 
        
          | PhpQSAR_numVolBits() numVolBits(std::string const & atomClass) -> size_t 
      PhpQSAR_numVolBits(PhpQSAR self, SwigStringVector atomClasses) -> 
      size_t
 |  |  | 
    |  | 
        
          | PhpQSAR_printDelimitedActivities(...) PhpQSAR_printDelimitedActivities(PhpQSAR self, std::ostream & outStream, SwigSizetVector observations, SwigStringVector qsarSet, ...
 |  |  | 
    |  | 
        
          | PhpQSAR_printDelimitedBits(...) PhpQSAR_printDelimitedBits(PhpQSAR self, std::ostream & outStream, SwigSizetVector observations, SwigStringVector qsarSet, ...
 |  |  | 
    |  | 
        
          | PhpQSAR_printModel(...) PhpQSAR_printModel(PhpQSAR self, std::ostream & outStream, bool 
      printVolumeBits=True)
 |  |  | 
    |  | 
        
          | PhpQSAR_printPred(...) printPred(std::ostream & outStream, std::vector< PhpMolModel,std::allocator< PhpMolModel > > const & molecules, ...
 |  |  | 
    |  | 
        
          | PhpQSAR_printVolOccBits(...) printVolOccBits(std::ostream & outStream, std::vector< PhpMolModel,std::allocator< PhpMolModel > > const & molecules, ...
 |  |  | 
    |  | 
        
          | PhpQSAR_setTvalueFilterOff(...) PhpQSAR_setTvalueFilterOff(PhpQSAR self)
 |  |  | 
    |  | 
        
          | PhpQSAR_setTvalueFilterOn(...) PhpQSAR_setTvalueFilterOn(PhpQSAR self, double tmin, size_t n, size_t
      seed)
 |  |  | 
    |  |  | 
    |  | 
        
          | PhpQSAR_swigregister(...) |  |  | 
    |  | 
        
          | PhpQSAR_testModel(...) testModel(std::vector< PhpMolModel,std::allocator< PhpMolModel > > const & molecules, SwigDoubleVector activities, ...
 |  |  | 
    |  | 
        
          | PhpSiteConstrainer_addConstraint(...) PhpSiteConstrainer_addConstraint(PhpSiteConstrainer self, 
      PhpSiteConstraint constraint)
 |  |  | 
    |  | 
        
          | PhpSiteConstrainer_clear(...) PhpSiteConstrainer_clear(PhpSiteConstrainer self)
 |  |  | 
    |  | 
        
          | PhpSiteConstrainer_exportConstraints(...) exportConstraints(std::string const & outFile) 
      PhpSiteConstrainer_exportConstraints(PhpSiteConstrainer self, 
      std::ostream & outStream)
 |  |  | 
    |  | 
        
          | PhpSiteConstrainer_getConstraint(...) PhpSiteConstrainer_getConstraint(PhpSiteConstrainer self, size_t i, 
      size_t numSites) -> PhpSiteConstraint
 |  |  | 
    |  | 
        
          | PhpSiteConstrainer_getConstraintValue(...) PhpSiteConstrainer_getConstraintValue(PhpSiteConstrainer self, 
      std::vector< PhpSite,std::allocator< PhpSite > > const 
      & sites) -> double
 |  |  | 
    | std::vector< PhpSiteConstraint,std::allocator< 
      PhpSiteConstraint > > | 
        
          | PhpSiteConstrainer_getConstraints() PhpSiteConstrainer_getConstraints(PhpSiteConstrainer self, size_t 
      numSites) -> std::vector< PhpSiteConstraint,std::allocator< 
      PhpSiteConstraint > >
 |  |  | 
    |  | 
        
          | PhpSiteConstrainer_hasProjectedSites(...) PhpSiteConstrainer_hasProjectedSites(PhpSiteConstrainer self) -> 
      bool
 |  |  | 
    |  | 
        
          | PhpSiteConstrainer_importConstraints(...) importConstraints(std::string const & inFile) 
      PhpSiteConstrainer_importConstraints(PhpSiteConstrainer self, 
      std::istream & inStream)
 |  |  | 
    | size_t | 
        
          | PhpSiteConstrainer_numConstraints() PhpSiteConstrainer_numConstraints(PhpSiteConstrainer self, size_t 
      numSites) -> size_t
 |  |  | 
    |  | 
        
          | PhpSiteConstrainer_passes(...) passes(std::vector< PhpSite,std::allocator< PhpSite > > const & sites, PhpSiteConstraint constraint) -> bool...
 |  |  | 
    |  | 
        
          | PhpSiteConstrainer_printConstraint(...) PhpSiteConstrainer_printConstraint(PhpSiteConstrainer self, 
      PhpSiteConstraint constraint, std::ostream & outStream)
 |  |  | 
    |  | 
        
          | PhpSiteConstrainer_swiginit(...) |  |  | 
    |  | 
        
          | PhpSiteConstrainer_swigregister(...) |  |  | 
    |  | 
        
          | PhpSiteConstraint_getSiteIndices(...) PhpSiteConstraint_getSiteIndices(PhpSiteConstraint self) -> 
      SwigIntVector
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_getSiteTypes(...) PhpSiteConstraint_getSiteTypes(PhpSiteConstraint self) -> 
      std::string
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_getTol(...) PhpSiteConstraint_getTol(PhpSiteConstraint self) -> double
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_getValue(...) PhpSiteConstraint_getValue(PhpSiteConstraint self) -> double
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_setConstraint(...) PhpSiteConstraint_setConstraint(PhpSiteConstraint self, SwigIntVector u_siteIndices, std::string const & u_siteTypes, ...
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_siteIndices_get(...) PhpSiteConstraint_siteIndices_get(PhpSiteConstraint self) -> 
      SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_siteIndices_set(...) PhpSiteConstraint_siteIndices_set(PhpSiteConstraint self, 
      SwigSizetVector siteIndices)
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_siteTypes_get(...) PhpSiteConstraint_siteTypes_get(PhpSiteConstraint self) -> 
      std::string const &
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_siteTypes_set(...) PhpSiteConstraint_siteTypes_set(PhpSiteConstraint self, std::string 
      const & siteTypes)
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_swiginit(...) |  |  | 
    |  | 
        
          | PhpSiteConstraint_swigregister(...) |  |  | 
    |  | 
        
          | PhpSiteConstraint_tol_get(...) PhpSiteConstraint_tol_get(PhpSiteConstraint self) -> double
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_tol_set(...) PhpSiteConstraint_tol_set(PhpSiteConstraint self, double tol)
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_value_get(...) PhpSiteConstraint_value_get(PhpSiteConstraint self) -> double
 |  |  | 
    |  | 
        
          | PhpSiteConstraint_value_set(...) PhpSiteConstraint_value_set(PhpSiteConstraint self, double value)
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_getMaskValue(...) PhpSiteMaskData_getMaskValue(PhpSiteMaskData self) -> int
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_getSiteNumber(...) PhpSiteMaskData_getSiteNumber(PhpSiteMaskData self) -> int
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_getSiteType(...) PhpSiteMaskData_getSiteType(PhpSiteMaskData self) -> char
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_maskValue_get(...) PhpSiteMaskData_maskValue_get(PhpSiteMaskData self) -> int
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_maskValue_set(...) PhpSiteMaskData_maskValue_set(PhpSiteMaskData self, int maskValue)
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_setData(...) PhpSiteMaskData_setData(PhpSiteMaskData self, int u_siteNumber, char 
      u_site, int u_maskValue)
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_siteNumber_get(...) PhpSiteMaskData_siteNumber_get(PhpSiteMaskData self) -> size_t
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_siteNumber_set(...) PhpSiteMaskData_siteNumber_set(PhpSiteMaskData self, size_t 
      siteNumber)
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_siteType_get(...) PhpSiteMaskData_siteType_get(PhpSiteMaskData self) -> char
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_siteType_set(...) PhpSiteMaskData_siteType_set(PhpSiteMaskData self, char siteType)
 |  |  | 
    |  | 
        
          | PhpSiteMaskData_swiginit(...) |  |  | 
    |  | 
        
          | PhpSiteMaskData_swigregister(...) |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_getGroupNumber(...) PhpSiteMaskGroup_getGroupNumber(PhpSiteMaskGroup self) -> int
 |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_getMinMatch(...) PhpSiteMaskGroup_getMinMatch(PhpSiteMaskGroup self) -> int
 |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_getSiteIndices(...) PhpSiteMaskGroup_getSiteIndices(PhpSiteMaskGroup self) -> 
      SwigIntVector
 |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_groupNumber_get(...) PhpSiteMaskGroup_groupNumber_get(PhpSiteMaskGroup self) -> size_t
 |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_groupNumber_set(...) PhpSiteMaskGroup_groupNumber_set(PhpSiteMaskGroup self, size_t 
      groupNumber)
 |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_minMatch_get(...) PhpSiteMaskGroup_minMatch_get(PhpSiteMaskGroup self) -> size_t
 |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_minMatch_set(...) PhpSiteMaskGroup_minMatch_set(PhpSiteMaskGroup self, size_t minMatch)
 |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_setGroup(...) PhpSiteMaskGroup_setGroup(PhpSiteMaskGroup self, SwigIntVector 
      u_siteIndices, int u_minMatch, int u_groupNumber)
 |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_siteIndices_get(...) PhpSiteMaskGroup_siteIndices_get(PhpSiteMaskGroup self) -> 
      SwigSizetVector
 |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_siteIndices_set(...) PhpSiteMaskGroup_siteIndices_set(PhpSiteMaskGroup self, 
      SwigSizetVector siteIndices)
 |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_swiginit(...) |  |  | 
    |  | 
        
          | PhpSiteMaskGroup_swigregister(...) |  |  | 
    |  | 
        
          | PhpSiteMask_addSiteMaskData(...) addSiteMaskData(size_t siteNumber, char siteType, int maskValue) 
      PhpSiteMask_addSiteMaskData(PhpSiteMask self, PhpSiteMaskData 
      siteMaskData)
 |  |  | 
    |  | 
        
          | PhpSiteMask_addSiteMaskGroup(...) addSiteMaskGroup(SwigSizetVector siteIndices, size_t minMatch) 
      PhpSiteMask_addSiteMaskGroup(PhpSiteMask self, PhpSiteMaskGroup 
      group)
 |  |  | 
    |  | 
        
          | PhpSiteMask_clear(...) PhpSiteMask_clear(PhpSiteMask self)
 |  |  | 
    |  | 
        
          | PhpSiteMask_clearSiteMaskGroups(...) PhpSiteMask_clearSiteMaskGroups(PhpSiteMask self)
 |  |  | 
    |  | 
        
          | PhpSiteMask_exportToFile(...) PhpSiteMask_exportToFile(PhpSiteMask self, std::string const & 
      fileName)
 |  |  | 
    |  | 
        
          | PhpSiteMask_exportToStream(...) PhpSiteMask_exportToStream(PhpSiteMask self, std::ostream & 
      outStream)
 |  |  | 
    |  | 
        
          | PhpSiteMask_getMatchLimits(...) PhpSiteMask_getMatchLimits(SwigIntVector siteMask) -> 
      SwigIntVector
 |  |  | 
    |  | 
        
          | PhpSiteMask_getSiteMaskData(...) PhpSiteMask_getSiteMaskData(PhpSiteMask self, size_t siteIndex) ->
      PhpSiteMaskData
 |  |  | 
    |  | 
        
          | PhpSiteMask_getSiteMaskGroups(...) PhpSiteMask_getSiteMaskGroups(PhpSiteMask self) -> std::vector<
      PhpSiteMaskGroup,std::allocator< PhpSiteMaskGroup > >
 |  |  | 
    |  | 
        
          | PhpSiteMask_getSiteMaskValue(...) PhpSiteMask_getSiteMaskValue(PhpSiteMask self, size_t siteIndex) 
      -> int
 |  |  | 
    |  | 
        
          | PhpSiteMask_getSiteMaskVector(...) PhpSiteMask_getSiteMaskVector(PhpSiteMask self) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpSiteMask_getSiteNumber(...) PhpSiteMask_getSiteNumber(PhpSiteMask self, size_t siteIndex) -> 
      size_t
 |  |  | 
    |  | 
        
          | PhpSiteMask_getSiteType(...) PhpSiteMask_getSiteType(PhpSiteMask self, size_t siteIndex) -> 
      char
 |  |  | 
    |  | 
        
          | PhpSiteMask_importFromFile(...) PhpSiteMask_importFromFile(PhpSiteMask self, std::string const & 
      fileName)
 |  |  | 
    |  | 
        
          | PhpSiteMask_importFromStream(...) PhpSiteMask_importFromStream(PhpSiteMask self, std::istream & 
      inStream)
 |  |  | 
    |  | 
        
          | PhpSiteMask_numSites(...) PhpSiteMask_numSites(PhpSiteMask self) -> size_t
 |  |  | 
    |  | 
        
          | PhpSiteMask_resolveMaskValue(...) PhpSiteMask_resolveMaskValue(int maskValue, size_t & groupNumber,
      size_t & minMatch)
 |  |  | 
    |  | 
        
          | PhpSiteMask_resolveMatchLimits(...) PhpSiteMask_resolveMatchLimits(SwigIntVector siteMask, size_t & 
      minSites, size_t & maxSites)
 |  |  | 
    |  | 
        
          | PhpSiteMask_splitMaskValue(...) PhpSiteMask_splitMaskValue(int maskValue) -> SwigIntVector
 |  |  | 
    |  | 
        
          | PhpSiteMask_swiginit(...) |  |  | 
    |  | 
        
          | PhpSiteMask_swigregister(...) |  |  | 
    |  | 
        
          | PhpSite___eq__(...) PhpSite___eq__(PhpSite self, PhpSite arg2) -> bool
 |  |  | 
    |  | 
        
          | PhpSite___ne__(...) PhpSite___ne__(PhpSite self, PhpSite rhs) -> bool
 |  |  | 
    |  | 
        
          | PhpSite_calculateSimilarity(...) PhpSite_calculateSimilarity(PhpSite self, PhpSite rhs) -> double
 |  |  | 
    |  | 
        
          | PhpSite_distance(...) PhpSite_distance(PhpSite self, PhpSite rhs) -> double
 |  |  | 
    |  | 
        
          | PhpSite_getProjectedOnly(...) PhpSite_getProjectedOnly(PhpSite self) -> bool
 |  |  | 
    |  | 
        
          | PhpSite_getSiteName(...) PhpSite_getSiteName(PhpSite self, int offset=1) -> std::string
 |  |  | 
    |  | 
        
          | PhpSite_getSiteNumber(...) PhpSite_getSiteNumber(PhpSite self) -> size_t
 |  |  | 
    |  | 
        
          | PhpSite_getSiteSimilarity(...) PhpSite_getSiteSimilarity(PhpSite self) -> int
 |  |  | 
    |  | 
        
          | PhpSite_getSiteStatus(...) PhpSite_getSiteStatus(PhpSite self) -> int
 |  |  | 
    |  | 
        
          | PhpSite_getSiteType(...) PhpSite_getSiteType(PhpSite self) -> std::string
 |  |  | 
    |  | 
        
          | PhpSite_getSiteTypeChar(...) PhpSite_getSiteTypeChar(PhpSite self) -> char
 |  |  | 
    |  | 
        
          | PhpSite_getXCoord(...) PhpSite_getXCoord(PhpSite self) -> double
 |  |  | 
    |  | 
        
          | PhpSite_getYCoord(...) PhpSite_getYCoord(PhpSite self) -> double
 |  |  | 
    |  | 
        
          | PhpSite_getZCoord(...) PhpSite_getZCoord(PhpSite self) -> double
 |  |  | 
    |  | 
        
          | PhpSite_setCoordinates(...) PhpSite_setCoordinates(PhpSite self, double a_x, double a_y, double 
      a_z)
 |  |  | 
    |  | 
        
          | PhpSite_setProjectedOnly(...) PhpSite_setProjectedOnly(PhpSite self, bool const a_status)
 |  |  | 
    |  | 
        
          | PhpSite_setProjectedOnlyOff(...) PhpSite_setProjectedOnlyOff(PhpSite self)
 |  |  | 
    |  | 
        
          | PhpSite_setProjectedOnlyOn(...) PhpSite_setProjectedOnlyOn(PhpSite self)
 |  |  | 
    |  | 
        
          | PhpSite_setSiteNumber(...) PhpSite_setSiteNumber(PhpSite self, size_t const a_number)
 |  |  | 
    |  | 
        
          | PhpSite_setSiteSimilarity(...) PhpSite_setSiteSimilarity(PhpSite self, int const a_type)
 |  |  | 
    |  | 
        
          | PhpSite_setSiteStatusOff(...) PhpSite_setSiteStatusOff(PhpSite self)
 |  |  | 
    |  | 
        
          | PhpSite_setSiteStatusOn(...) PhpSite_setSiteStatusOn(PhpSite self)
 |  |  | 
    |  | 
        
          | PhpSite_setSiteType(...) PhpSite_setSiteType(PhpSite self, std::string const & a_type)
 |  |  | 
    |  | 
        
          | PhpSite_setSiteTypeChar(...) PhpSite_setSiteTypeChar(PhpSite self, char const a_char)
 |  |  | 
    |  | 
        
          | PhpSite_setStatus(...) PhpSite_setStatus(PhpSite self, int const a_status)
 |  |  | 
    |  | 
        
          | PhpSite_setXCoord(...) PhpSite_setXCoord(PhpSite self, double a_x)
 |  |  | 
    |  | 
        
          | PhpSite_setYCoord(...) PhpSite_setYCoord(PhpSite self, double a_y)
 |  |  | 
    |  | 
        
          | PhpSite_setZCoord(...) PhpSite_setZCoord(PhpSite self, double a_z)
 |  |  | 
    |  |  | 
    |  | 
        
          | PhpSite_swigregister(...) |  |  | 
    |  | 
        
          | PhpVolCoords_swiginit(...) |  |  | 
    |  | 
        
          | PhpVolCoords_swigregister(...) |  |  | 
    |  | 
        
          | PhpVolCoords_x_get(...) PhpVolCoords_x_get(PhpVolCoords self) -> double
 |  |  | 
    |  | 
        
          | PhpVolCoords_x_set(...) PhpVolCoords_x_set(PhpVolCoords self, double x)
 |  |  | 
    |  | 
        
          | PhpVolCoords_y_get(...) PhpVolCoords_y_get(PhpVolCoords self) -> double
 |  |  | 
    |  | 
        
          | PhpVolCoords_y_set(...) PhpVolCoords_y_set(PhpVolCoords self, double y)
 |  |  | 
    |  | 
        
          | PhpVolCoords_z_get(...) PhpVolCoords_z_get(PhpVolCoords self) -> double
 |  |  | 
    |  | 
        
          | PhpVolCoords_z_set(...) PhpVolCoords_z_set(PhpVolCoords self, double z)
 |  |  | 
    |  | 
        
          | SWIG_PyInstanceMethod_New(...) |  |  | 
    |  | 
        
          | SwigDoubleVector___bool__(...) SwigDoubleVector___bool__(SwigDoubleVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigDoubleVector___delitem__(...) __delitem__(std::vector< double >::difference_type i) 
      SwigDoubleVector___delitem__(SwigDoubleVector self, PySliceObject * 
      slice)
 |  |  | 
    |  | 
        
          | SwigDoubleVector___delslice__(...) SwigDoubleVector___delslice__(SwigDoubleVector self, std::vector< 
      double >::difference_type i, std::vector< double 
      >::difference_type j)
 |  |  | 
    |  | 
        
          | SwigDoubleVector___getitem__(...) __getitem__(PySliceObject * slice) -> SwigDoubleVector 
      SwigDoubleVector___getitem__(SwigDoubleVector self, std::vector< 
      double >::difference_type i) -> std::vector< double 
      >::value_type const &
 |  |  | 
    |  | 
        
          | SwigDoubleVector___getslice__(...) SwigDoubleVector___getslice__(SwigDoubleVector self, std::vector< 
      double >::difference_type i, std::vector< double 
      >::difference_type j) -> SwigDoubleVector
 |  |  | 
    |  | 
        
          | SwigDoubleVector___len__(...) SwigDoubleVector___len__(SwigDoubleVector self) -> std::vector<
      double >::size_type
 |  |  | 
    |  | 
        
          | SwigDoubleVector___nonzero__(...) SwigDoubleVector___nonzero__(SwigDoubleVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigDoubleVector___setitem__(...) __setitem__(PySliceObject * slice, SwigDoubleVector v) 
      __setitem__(PySliceObject * slice) 
      SwigDoubleVector___setitem__(SwigDoubleVector self, std::vector< 
      double >::difference_type i, std::vector< double 
      >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigDoubleVector___setslice__(...) SwigDoubleVector___setslice__(SwigDoubleVector self, std::vector< double >::difference_type i, std::vector< double >::difference_type j, ...
 |  |  | 
    |  | 
        
          | SwigDoubleVector_append(...) SwigDoubleVector_append(SwigDoubleVector self, std::vector< double
      >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigDoubleVector_assign(...) SwigDoubleVector_assign(SwigDoubleVector self, std::vector< double
      >::size_type n, std::vector< double >::value_type const 
      & x)
 |  |  | 
    |  | 
        
          | SwigDoubleVector_back(...) SwigDoubleVector_back(SwigDoubleVector self) -> std::vector< 
      double >::value_type const &
 |  |  | 
    |  | 
        
          | SwigDoubleVector_begin(...) SwigDoubleVector_begin(SwigDoubleVector self) -> std::vector< 
      double >::iterator
 |  |  | 
    |  | 
        
          | SwigDoubleVector_capacity(...) SwigDoubleVector_capacity(SwigDoubleVector self) -> 
      std::vector< double >::size_type
 |  |  | 
    |  | 
        
          | SwigDoubleVector_clear(...) SwigDoubleVector_clear(SwigDoubleVector self)
 |  |  | 
    |  | 
        
          | SwigDoubleVector_empty(...) SwigDoubleVector_empty(SwigDoubleVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigDoubleVector_end(...) SwigDoubleVector_end(SwigDoubleVector self) -> std::vector< 
      double >::iterator
 |  |  | 
    |  | 
        
          | SwigDoubleVector_erase(...) erase(std::vector< double >::iterator pos) -> 
      std::vector< double >::iterator 
      SwigDoubleVector_erase(SwigDoubleVector self, std::vector< double 
      >::iterator first, std::vector< double >::iterator last) 
      -> std::vector< double >::iterator
 |  |  | 
    |  | 
        
          | SwigDoubleVector_front(...) SwigDoubleVector_front(SwigDoubleVector self) -> std::vector< 
      double >::value_type const &
 |  |  | 
    |  | 
        
          | SwigDoubleVector_get_allocator(...) SwigDoubleVector_get_allocator(SwigDoubleVector self) -> 
      std::vector< double >::allocator_type
 |  |  | 
    |  | 
        
          | SwigDoubleVector_insert(...) insert(std::vector< double >::iterator pos, std::vector< double >::value_type const & x) -> std::vector< double >::iterator...
 |  |  | 
    |  | 
        
          | SwigDoubleVector_iterator(...) SwigDoubleVector_iterator(SwigDoubleVector self) -> SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigDoubleVector_pop(...) SwigDoubleVector_pop(SwigDoubleVector self) -> std::vector< 
      double >::value_type
 |  |  | 
    |  | 
        
          | SwigDoubleVector_pop_back(...) SwigDoubleVector_pop_back(SwigDoubleVector self)
 |  |  | 
    |  | 
        
          | SwigDoubleVector_push_back(...) SwigDoubleVector_push_back(SwigDoubleVector self, std::vector< 
      double >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigDoubleVector_rbegin(...) SwigDoubleVector_rbegin(SwigDoubleVector self) -> std::vector< 
      double >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigDoubleVector_rend(...) SwigDoubleVector_rend(SwigDoubleVector self) -> std::vector< 
      double >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigDoubleVector_reserve(...) SwigDoubleVector_reserve(SwigDoubleVector self, std::vector< 
      double >::size_type n)
 |  |  | 
    |  | 
        
          | SwigDoubleVector_resize(...) resize(std::vector< double >::size_type new_size) 
      SwigDoubleVector_resize(SwigDoubleVector self, std::vector< double
      >::size_type new_size, std::vector< double >::value_type 
      const & x)
 |  |  | 
    |  | 
        
          | SwigDoubleVector_size(...) SwigDoubleVector_size(SwigDoubleVector self) -> std::vector< 
      double >::size_type
 |  |  | 
    |  | 
        
          | SwigDoubleVector_swap(...) SwigDoubleVector_swap(SwigDoubleVector self, SwigDoubleVector v)
 |  |  | 
    |  | 
        
          | SwigDoubleVector_swiginit(...) |  |  | 
    |  | 
        
          | SwigDoubleVector_swigregister(...) |  |  | 
    |  | 
        
          | SwigIntVector___bool__(...) SwigIntVector___bool__(SwigIntVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigIntVector___delitem__(...) __delitem__(std::vector< int >::difference_type i) 
      SwigIntVector___delitem__(SwigIntVector self, PySliceObject * slice)
 |  |  | 
    |  | 
        
          | SwigIntVector___delslice__(...) SwigIntVector___delslice__(SwigIntVector self, std::vector< int 
      >::difference_type i, std::vector< int >::difference_type j)
 |  |  | 
    |  | 
        
          | SwigIntVector___getitem__(...) __getitem__(PySliceObject * slice) -> SwigIntVector 
      SwigIntVector___getitem__(SwigIntVector self, std::vector< int 
      >::difference_type i) -> std::vector< int >::value_type 
      const &
 |  |  | 
    |  | 
        
          | SwigIntVector___getslice__(...) SwigIntVector___getslice__(SwigIntVector self, std::vector< int 
      >::difference_type i, std::vector< int >::difference_type j)
      -> SwigIntVector
 |  |  | 
    |  | 
        
          | SwigIntVector___len__(...) SwigIntVector___len__(SwigIntVector self) -> std::vector< int 
      >::size_type
 |  |  | 
    |  | 
        
          | SwigIntVector___nonzero__(...) SwigIntVector___nonzero__(SwigIntVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigIntVector___setitem__(...) __setitem__(PySliceObject * slice, SwigIntVector v) 
      __setitem__(PySliceObject * slice) 
      SwigIntVector___setitem__(SwigIntVector self, std::vector< int 
      >::difference_type i, std::vector< int >::value_type const 
      & x)
 |  |  | 
    |  | 
        
          | SwigIntVector___setslice__(...) SwigIntVector___setslice__(SwigIntVector self, std::vector< int >::difference_type i, std::vector< int >::difference_type j, ...
 |  |  | 
    |  | 
        
          | SwigIntVector_append(...) SwigIntVector_append(SwigIntVector self, std::vector< int 
      >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigIntVector_assign(...) SwigIntVector_assign(SwigIntVector self, std::vector< int 
      >::size_type n, std::vector< int >::value_type const & 
      x)
 |  |  | 
    |  | 
        
          | SwigIntVector_back(...) SwigIntVector_back(SwigIntVector self) -> std::vector< int 
      >::value_type const &
 |  |  | 
    |  | 
        
          | SwigIntVector_begin(...) SwigIntVector_begin(SwigIntVector self) -> std::vector< int 
      >::iterator
 |  |  | 
    |  | 
        
          | SwigIntVector_capacity(...) SwigIntVector_capacity(SwigIntVector self) -> std::vector< int 
      >::size_type
 |  |  | 
    |  | 
        
          | SwigIntVector_clear(...) SwigIntVector_clear(SwigIntVector self)
 |  |  | 
    |  | 
        
          | SwigIntVector_empty(...) SwigIntVector_empty(SwigIntVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigIntVector_end(...) SwigIntVector_end(SwigIntVector self) -> std::vector< int 
      >::iterator
 |  |  | 
    |  | 
        
          | SwigIntVector_erase(...) erase(std::vector< int >::iterator pos) -> std::vector< 
      int >::iterator SwigIntVector_erase(SwigIntVector self, 
      std::vector< int >::iterator first, std::vector< int 
      >::iterator last) -> std::vector< int >::iterator
 |  |  | 
    |  | 
        
          | SwigIntVector_front(...) SwigIntVector_front(SwigIntVector self) -> std::vector< int 
      >::value_type const &
 |  |  | 
    |  | 
        
          | SwigIntVector_get_allocator(...) SwigIntVector_get_allocator(SwigIntVector self) -> std::vector<
      int >::allocator_type
 |  |  | 
    |  | 
        
          | SwigIntVector_insert(...) insert(std::vector< int >::iterator pos, std::vector< int >::value_type const & x) -> std::vector< int >::iterator...
 |  |  | 
    |  | 
        
          | SwigIntVector_iterator(...) SwigIntVector_iterator(SwigIntVector self) -> SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigIntVector_pop(...) SwigIntVector_pop(SwigIntVector self) -> std::vector< int 
      >::value_type
 |  |  | 
    |  | 
        
          | SwigIntVector_pop_back(...) SwigIntVector_pop_back(SwigIntVector self)
 |  |  | 
    |  | 
        
          | SwigIntVector_push_back(...) SwigIntVector_push_back(SwigIntVector self, std::vector< int 
      >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigIntVector_rbegin(...) SwigIntVector_rbegin(SwigIntVector self) -> std::vector< int 
      >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigIntVector_rend(...) SwigIntVector_rend(SwigIntVector self) -> std::vector< int 
      >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigIntVector_reserve(...) SwigIntVector_reserve(SwigIntVector self, std::vector< int 
      >::size_type n)
 |  |  | 
    |  | 
        
          | SwigIntVector_resize(...) resize(std::vector< int >::size_type new_size) 
      SwigIntVector_resize(SwigIntVector self, std::vector< int 
      >::size_type new_size, std::vector< int >::value_type const 
      & x)
 |  |  | 
    |  | 
        
          | SwigIntVector_size(...) SwigIntVector_size(SwigIntVector self) -> std::vector< int 
      >::size_type
 |  |  | 
    |  | 
        
          | SwigIntVector_swap(...) SwigIntVector_swap(SwigIntVector self, SwigIntVector v)
 |  |  | 
    |  | 
        
          | SwigIntVector_swiginit(...) |  |  | 
    |  | 
        
          | SwigIntVector_swigregister(...) |  |  | 
    |  | 
        
          | SwigPyIterator___add__(...) SwigPyIterator___add__(SwigPyIterator self, ptrdiff_t n) -> 
      SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigPyIterator___eq__(...) SwigPyIterator___eq__(SwigPyIterator self, SwigPyIterator x) -> 
      bool
 |  |  | 
    |  | 
        
          | SwigPyIterator___iadd__(...) SwigPyIterator___iadd__(SwigPyIterator self, ptrdiff_t n) -> 
      SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigPyIterator___isub__(...) SwigPyIterator___isub__(SwigPyIterator self, ptrdiff_t n) -> 
      SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigPyIterator___ne__(...) SwigPyIterator___ne__(SwigPyIterator self, SwigPyIterator x) -> 
      bool
 |  |  | 
    |  | 
        
          | SwigPyIterator___next__(...) SwigPyIterator___next__(SwigPyIterator self) -> PyObject *
 |  |  | 
    |  | 
        
          | SwigPyIterator___sub__(...) __sub__(ptrdiff_t n) -> SwigPyIterator 
      SwigPyIterator___sub__(SwigPyIterator self, SwigPyIterator x) -> 
      ptrdiff_t
 |  |  | 
    |  | 
        
          | SwigPyIterator_advance(...) SwigPyIterator_advance(SwigPyIterator self, ptrdiff_t n) -> 
      SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigPyIterator_copy(...) SwigPyIterator_copy(SwigPyIterator self) -> SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigPyIterator_decr(...) SwigPyIterator_decr(SwigPyIterator self, size_t n=1) -> 
      SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigPyIterator_distance(...) SwigPyIterator_distance(SwigPyIterator self, SwigPyIterator x) -> 
      ptrdiff_t
 |  |  | 
    |  | 
        
          | SwigPyIterator_equal(...) SwigPyIterator_equal(SwigPyIterator self, SwigPyIterator x) -> 
      bool
 |  |  | 
    |  | 
        
          | SwigPyIterator_incr(...) SwigPyIterator_incr(SwigPyIterator self, size_t n=1) -> 
      SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigPyIterator_next(...) SwigPyIterator_next(SwigPyIterator self) -> PyObject *
 |  |  | 
    |  | 
        
          | SwigPyIterator_previous(...) SwigPyIterator_previous(SwigPyIterator self) -> PyObject *
 |  |  | 
    |  | 
        
          | SwigPyIterator_swigregister(...) |  |  | 
    |  | 
        
          | SwigPyIterator_value(...) SwigPyIterator_value(SwigPyIterator self) -> PyObject *
 |  |  | 
    |  | 
        
          | SwigSizetVector___bool__(...) SwigSizetVector___bool__(SwigSizetVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigSizetVector___delitem__(...) __delitem__(std::vector< size_t >::difference_type i) 
      SwigSizetVector___delitem__(SwigSizetVector self, PySliceObject * 
      slice)
 |  |  | 
    |  | 
        
          | SwigSizetVector___delslice__(...) SwigSizetVector___delslice__(SwigSizetVector self, std::vector< 
      size_t >::difference_type i, std::vector< size_t 
      >::difference_type j)
 |  |  | 
    |  | 
        
          | SwigSizetVector___getitem__(...) __getitem__(PySliceObject * slice) -> SwigSizetVector 
      SwigSizetVector___getitem__(SwigSizetVector self, std::vector< 
      size_t >::difference_type i) -> std::vector< size_t 
      >::value_type const &
 |  |  | 
    |  | 
        
          | SwigSizetVector___getslice__(...) SwigSizetVector___getslice__(SwigSizetVector self, std::vector< 
      size_t >::difference_type i, std::vector< size_t 
      >::difference_type j) -> SwigSizetVector
 |  |  | 
    |  | 
        
          | SwigSizetVector___len__(...) SwigSizetVector___len__(SwigSizetVector self) -> std::vector< 
      size_t >::size_type
 |  |  | 
    |  | 
        
          | SwigSizetVector___nonzero__(...) SwigSizetVector___nonzero__(SwigSizetVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigSizetVector___setitem__(...) __setitem__(PySliceObject * slice, SwigSizetVector v) 
      __setitem__(PySliceObject * slice) 
      SwigSizetVector___setitem__(SwigSizetVector self, std::vector< 
      size_t >::difference_type i, std::vector< size_t 
      >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigSizetVector___setslice__(...) SwigSizetVector___setslice__(SwigSizetVector self, std::vector< size_t >::difference_type i, std::vector< size_t >::difference_type j, ...
 |  |  | 
    |  | 
        
          | SwigSizetVector_append(...) SwigSizetVector_append(SwigSizetVector self, std::vector< size_t 
      >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigSizetVector_assign(...) SwigSizetVector_assign(SwigSizetVector self, std::vector< size_t 
      >::size_type n, std::vector< size_t >::value_type const 
      & x)
 |  |  | 
    |  | 
        
          | SwigSizetVector_back(...) SwigSizetVector_back(SwigSizetVector self) -> std::vector< 
      size_t >::value_type const &
 |  |  | 
    |  | 
        
          | SwigSizetVector_begin(...) SwigSizetVector_begin(SwigSizetVector self) -> std::vector< 
      size_t >::iterator
 |  |  | 
    |  | 
        
          | SwigSizetVector_capacity(...) SwigSizetVector_capacity(SwigSizetVector self) -> std::vector< 
      size_t >::size_type
 |  |  | 
    |  | 
        
          | SwigSizetVector_clear(...) SwigSizetVector_clear(SwigSizetVector self)
 |  |  | 
    |  | 
        
          | SwigSizetVector_empty(...) SwigSizetVector_empty(SwigSizetVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigSizetVector_end(...) SwigSizetVector_end(SwigSizetVector self) -> std::vector< 
      size_t >::iterator
 |  |  | 
    |  | 
        
          | SwigSizetVector_erase(...) erase(std::vector< size_t >::iterator pos) -> 
      std::vector< size_t >::iterator 
      SwigSizetVector_erase(SwigSizetVector self, std::vector< size_t 
      >::iterator first, std::vector< size_t >::iterator last) 
      -> std::vector< size_t >::iterator
 |  |  | 
    |  | 
        
          | SwigSizetVector_front(...) SwigSizetVector_front(SwigSizetVector self) -> std::vector< 
      size_t >::value_type const &
 |  |  | 
    |  | 
        
          | SwigSizetVector_get_allocator(...) SwigSizetVector_get_allocator(SwigSizetVector self) -> 
      std::vector< size_t >::allocator_type
 |  |  | 
    |  | 
        
          | SwigSizetVector_insert(...) insert(std::vector< size_t >::iterator pos, std::vector< size_t >::value_type const & x) -> std::vector< size_t >::iterator...
 |  |  | 
    |  | 
        
          | SwigSizetVector_iterator(...) SwigSizetVector_iterator(SwigSizetVector self) -> SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigSizetVector_pop(...) SwigSizetVector_pop(SwigSizetVector self) -> std::vector< 
      size_t >::value_type
 |  |  | 
    |  | 
        
          | SwigSizetVector_pop_back(...) SwigSizetVector_pop_back(SwigSizetVector self)
 |  |  | 
    |  | 
        
          | SwigSizetVector_push_back(...) SwigSizetVector_push_back(SwigSizetVector self, std::vector< 
      size_t >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigSizetVector_rbegin(...) SwigSizetVector_rbegin(SwigSizetVector self) -> std::vector< 
      size_t >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigSizetVector_rend(...) SwigSizetVector_rend(SwigSizetVector self) -> std::vector< 
      size_t >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigSizetVector_reserve(...) SwigSizetVector_reserve(SwigSizetVector self, std::vector< size_t 
      >::size_type n)
 |  |  | 
    |  | 
        
          | SwigSizetVector_resize(...) resize(std::vector< size_t >::size_type new_size) 
      SwigSizetVector_resize(SwigSizetVector self, std::vector< size_t 
      >::size_type new_size, std::vector< size_t >::value_type 
      const & x)
 |  |  | 
    |  | 
        
          | SwigSizetVector_size(...) SwigSizetVector_size(SwigSizetVector self) -> std::vector< 
      size_t >::size_type
 |  |  | 
    |  | 
        
          | SwigSizetVector_swap(...) SwigSizetVector_swap(SwigSizetVector self, SwigSizetVector v)
 |  |  | 
    |  | 
        
          | SwigSizetVector_swiginit(...) |  |  | 
    |  | 
        
          | SwigSizetVector_swigregister(...) |  |  | 
    |  | 
        
          | SwigStringVector___bool__(...) SwigStringVector___bool__(SwigStringVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigStringVector___delitem__(...) __delitem__(std::vector< std::string >::difference_type i) 
      SwigStringVector___delitem__(SwigStringVector self, PySliceObject * 
      slice)
 |  |  | 
    |  | 
        
          | SwigStringVector___delslice__(...) SwigStringVector___delslice__(SwigStringVector self, std::vector< 
      std::string >::difference_type i, std::vector< std::string 
      >::difference_type j)
 |  |  | 
    |  | 
        
          | SwigStringVector___getitem__(...) __getitem__(PySliceObject * slice) -> SwigStringVector 
      SwigStringVector___getitem__(SwigStringVector self, std::vector< 
      std::string >::difference_type i) -> std::vector< 
      std::string >::value_type const &
 |  |  | 
    |  | 
        
          | SwigStringVector___getslice__(...) SwigStringVector___getslice__(SwigStringVector self, std::vector< 
      std::string >::difference_type i, std::vector< std::string 
      >::difference_type j) -> SwigStringVector
 |  |  | 
    |  | 
        
          | SwigStringVector___len__(...) SwigStringVector___len__(SwigStringVector self) -> std::vector<
      std::string >::size_type
 |  |  | 
    |  | 
        
          | SwigStringVector___nonzero__(...) SwigStringVector___nonzero__(SwigStringVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigStringVector___setitem__(...) __setitem__(PySliceObject * slice, SwigStringVector v) 
      __setitem__(PySliceObject * slice) 
      SwigStringVector___setitem__(SwigStringVector self, std::vector< 
      std::string >::difference_type i, std::vector< std::string 
      >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigStringVector___setslice__(...) SwigStringVector___setslice__(SwigStringVector self, std::vector< std::string >::difference_type i, std::vector< std::string >::difference_type j, ...
 |  |  | 
    |  | 
        
          | SwigStringVector_append(...) SwigStringVector_append(SwigStringVector self, std::vector< 
      std::string >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigStringVector_assign(...) SwigStringVector_assign(SwigStringVector self, std::vector< 
      std::string >::size_type n, std::vector< std::string 
      >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigStringVector_back(...) SwigStringVector_back(SwigStringVector self) -> std::vector< 
      std::string >::value_type const &
 |  |  | 
    |  | 
        
          | SwigStringVector_begin(...) SwigStringVector_begin(SwigStringVector self) -> std::vector< 
      std::string >::iterator
 |  |  | 
    |  | 
        
          | SwigStringVector_capacity(...) SwigStringVector_capacity(SwigStringVector self) -> 
      std::vector< std::string >::size_type
 |  |  | 
    |  | 
        
          | SwigStringVector_clear(...) SwigStringVector_clear(SwigStringVector self)
 |  |  | 
    |  | 
        
          | SwigStringVector_empty(...) SwigStringVector_empty(SwigStringVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigStringVector_end(...) SwigStringVector_end(SwigStringVector self) -> std::vector< 
      std::string >::iterator
 |  |  | 
    |  | 
        
          | SwigStringVector_erase(...) erase(std::vector< std::string >::iterator pos) -> 
      std::vector< std::string >::iterator 
      SwigStringVector_erase(SwigStringVector self, std::vector< 
      std::string >::iterator first, std::vector< std::string 
      >::iterator last) -> std::vector< std::string >::iterator
 |  |  | 
    |  | 
        
          | SwigStringVector_front(...) SwigStringVector_front(SwigStringVector self) -> std::vector< 
      std::string >::value_type const &
 |  |  | 
    |  | 
        
          | SwigStringVector_get_allocator(...) SwigStringVector_get_allocator(SwigStringVector self) -> 
      std::vector< std::string >::allocator_type
 |  |  | 
    |  | 
        
          | SwigStringVector_insert(...) insert(std::vector< std::string >::iterator pos, std::vector< std::string >::value_type const & x) -> std::vector< std::string >::iterator...
 |  |  | 
    |  | 
        
          | SwigStringVector_iterator(...) SwigStringVector_iterator(SwigStringVector self) -> SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigStringVector_pop(...) SwigStringVector_pop(SwigStringVector self) -> std::vector< 
      std::string >::value_type
 |  |  | 
    |  | 
        
          | SwigStringVector_pop_back(...) SwigStringVector_pop_back(SwigStringVector self)
 |  |  | 
    |  | 
        
          | SwigStringVector_push_back(...) SwigStringVector_push_back(SwigStringVector self, std::vector< 
      std::string >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigStringVector_rbegin(...) SwigStringVector_rbegin(SwigStringVector self) -> std::vector< 
      std::string >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigStringVector_rend(...) SwigStringVector_rend(SwigStringVector self) -> std::vector< 
      std::string >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigStringVector_reserve(...) SwigStringVector_reserve(SwigStringVector self, std::vector< 
      std::string >::size_type n)
 |  |  | 
    |  | 
        
          | SwigStringVector_resize(...) resize(std::vector< std::string >::size_type new_size) 
      SwigStringVector_resize(SwigStringVector self, std::vector< 
      std::string >::size_type new_size, std::vector< std::string 
      >::value_type const & x)
 |  |  | 
    |  | 
        
          | SwigStringVector_size(...) SwigStringVector_size(SwigStringVector self) -> std::vector< 
      std::string >::size_type
 |  |  | 
    |  | 
        
          | SwigStringVector_swap(...) SwigStringVector_swap(SwigStringVector self, SwigStringVector v)
 |  |  | 
    |  | 
        
          | SwigStringVector_swiginit(...) |  |  | 
    |  | 
        
          | SwigStringVector_swigregister(...) |  |  | 
    |  | 
        
          | SwigVectorDoubleVector___bool__(...) SwigVectorDoubleVector___bool__(SwigVectorDoubleVector self) -> 
      bool
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector___delitem__(...) __delitem__(std::vector< std::vector< double > 
      >::difference_type i) 
      SwigVectorDoubleVector___delitem__(SwigVectorDoubleVector self, 
      PySliceObject * slice)
 |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorDoubleVector___getitem__(...) __getitem__(PySliceObject * slice) -> SwigVectorDoubleVector 
      SwigVectorDoubleVector___getitem__(SwigVectorDoubleVector self, 
      std::vector< std::vector< double > >::difference_type i) 
      -> SwigDoubleVector
 |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorDoubleVector___len__(...) SwigVectorDoubleVector___len__(SwigVectorDoubleVector self) -> 
      std::vector< std::vector< double > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector___nonzero__(...) SwigVectorDoubleVector___nonzero__(SwigVectorDoubleVector self) ->
      bool
 |  |  | 
    |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_append(...) SwigVectorDoubleVector_append(SwigVectorDoubleVector self, 
      SwigDoubleVector x)
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_assign(...) SwigVectorDoubleVector_assign(SwigVectorDoubleVector self, 
      std::vector< std::vector< double > >::size_type n, 
      SwigDoubleVector x)
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_back(...) SwigVectorDoubleVector_back(SwigVectorDoubleVector self) -> 
      SwigDoubleVector
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_begin(...) SwigVectorDoubleVector_begin(SwigVectorDoubleVector self) -> 
      std::vector< std::vector< double > >::iterator
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_capacity(...) SwigVectorDoubleVector_capacity(SwigVectorDoubleVector self) -> 
      std::vector< std::vector< double > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_clear(...) SwigVectorDoubleVector_clear(SwigVectorDoubleVector self)
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_empty(...) SwigVectorDoubleVector_empty(SwigVectorDoubleVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_end(...) SwigVectorDoubleVector_end(SwigVectorDoubleVector self) -> 
      std::vector< std::vector< double > >::iterator
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_erase(...) erase(std::vector< std::vector< double > >::iterator pos) -> std::vector< std::vector< double > >::iterator...
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_front(...) SwigVectorDoubleVector_front(SwigVectorDoubleVector self) -> 
      SwigDoubleVector
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_get_allocator(...) SwigVectorDoubleVector_get_allocator(SwigVectorDoubleVector self) 
      -> std::vector< std::vector< double > 
      >::allocator_type
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_insert(...) insert(std::vector< std::vector< double > >::iterator pos, SwigDoubleVector x) -> std::vector< std::vector< double > >::iterator...
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_iterator(...) SwigVectorDoubleVector_iterator(SwigVectorDoubleVector self) -> 
      SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_pop(...) SwigVectorDoubleVector_pop(SwigVectorDoubleVector self) -> 
      SwigDoubleVector
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_pop_back(...) SwigVectorDoubleVector_pop_back(SwigVectorDoubleVector self)
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_push_back(...) SwigVectorDoubleVector_push_back(SwigVectorDoubleVector self, 
      SwigDoubleVector x)
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_rbegin(...) SwigVectorDoubleVector_rbegin(SwigVectorDoubleVector self) -> 
      std::vector< std::vector< double > >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_rend(...) SwigVectorDoubleVector_rend(SwigVectorDoubleVector self) -> 
      std::vector< std::vector< double > >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_reserve(...) SwigVectorDoubleVector_reserve(SwigVectorDoubleVector self, 
      std::vector< std::vector< double > >::size_type n)
 |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_size(...) SwigVectorDoubleVector_size(SwigVectorDoubleVector self) -> 
      std::vector< std::vector< double > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_swap(...) SwigVectorDoubleVector_swap(SwigVectorDoubleVector self, 
      SwigVectorDoubleVector v)
 |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_swiginit(...) |  |  | 
    |  | 
        
          | SwigVectorDoubleVector_swigregister(...) |  |  | 
    |  | 
        
          | SwigVectorIntVector___bool__(...) SwigVectorIntVector___bool__(SwigVectorIntVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigVectorIntVector___delitem__(...) __delitem__(std::vector< std::vector< int > 
      >::difference_type i) 
      SwigVectorIntVector___delitem__(SwigVectorIntVector self, 
      PySliceObject * slice)
 |  |  | 
    |  | 
        
          | SwigVectorIntVector___delslice__(...) SwigVectorIntVector___delslice__(SwigVectorIntVector self, 
      std::vector< std::vector< int > >::difference_type i, 
      std::vector< std::vector< int > >::difference_type j)
 |  |  | 
    |  | 
        
          | SwigVectorIntVector___getitem__(...) __getitem__(PySliceObject * slice) -> SwigVectorIntVector 
      SwigVectorIntVector___getitem__(SwigVectorIntVector self, 
      std::vector< std::vector< int > >::difference_type i) 
      -> SwigIntVector
 |  |  | 
    |  | 
        
          | SwigVectorIntVector___getslice__(...) SwigVectorIntVector___getslice__(SwigVectorIntVector self, 
      std::vector< std::vector< int > >::difference_type i, 
      std::vector< std::vector< int > >::difference_type j) 
      -> SwigVectorIntVector
 |  |  | 
    |  | 
        
          | SwigVectorIntVector___len__(...) SwigVectorIntVector___len__(SwigVectorIntVector self) -> 
      std::vector< std::vector< int > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorIntVector___nonzero__(...) SwigVectorIntVector___nonzero__(SwigVectorIntVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigVectorIntVector___setitem__(...) __setitem__(PySliceObject * slice, SwigVectorIntVector v) 
      __setitem__(PySliceObject * slice) 
      SwigVectorIntVector___setitem__(SwigVectorIntVector self, 
      std::vector< std::vector< int > >::difference_type i, 
      SwigIntVector x)
 |  |  | 
    |  | 
        
          | SwigVectorIntVector___setslice__(...) SwigVectorIntVector___setslice__(SwigVectorIntVector self, std::vector< std::vector< int > >::difference_type i, std::vector< std::vector< int > >::difference_type j, ...
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_append(...) SwigVectorIntVector_append(SwigVectorIntVector self, SwigIntVector x)
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_assign(...) SwigVectorIntVector_assign(SwigVectorIntVector self, std::vector< 
      std::vector< int > >::size_type n, SwigIntVector x)
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_back(...) SwigVectorIntVector_back(SwigVectorIntVector self) -> 
      SwigIntVector
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_begin(...) SwigVectorIntVector_begin(SwigVectorIntVector self) -> 
      std::vector< std::vector< int > >::iterator
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_capacity(...) SwigVectorIntVector_capacity(SwigVectorIntVector self) -> 
      std::vector< std::vector< int > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_clear(...) SwigVectorIntVector_clear(SwigVectorIntVector self)
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_empty(...) SwigVectorIntVector_empty(SwigVectorIntVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_end(...) SwigVectorIntVector_end(SwigVectorIntVector self) -> 
      std::vector< std::vector< int > >::iterator
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_erase(...) erase(std::vector< std::vector< int > >::iterator pos) 
      -> std::vector< std::vector< int > >::iterator 
      SwigVectorIntVector_erase(SwigVectorIntVector self, std::vector< 
      std::vector< int > >::iterator first, std::vector< 
      std::vector< int > >::iterator last) -> std::vector< 
      std::vector< int > >::iterator
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_front(...) SwigVectorIntVector_front(SwigVectorIntVector self) -> 
      SwigIntVector
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_get_allocator(...) SwigVectorIntVector_get_allocator(SwigVectorIntVector self) -> 
      std::vector< std::vector< int > >::allocator_type
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_insert(...) insert(std::vector< std::vector< int > >::iterator pos, SwigIntVector x) -> std::vector< std::vector< int > >::iterator...
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_iterator(...) SwigVectorIntVector_iterator(SwigVectorIntVector self) -> 
      SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_pop(...) SwigVectorIntVector_pop(SwigVectorIntVector self) -> SwigIntVector
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_pop_back(...) SwigVectorIntVector_pop_back(SwigVectorIntVector self)
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_push_back(...) SwigVectorIntVector_push_back(SwigVectorIntVector self, SwigIntVector
      x)
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_rbegin(...) SwigVectorIntVector_rbegin(SwigVectorIntVector self) -> 
      std::vector< std::vector< int > >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_rend(...) SwigVectorIntVector_rend(SwigVectorIntVector self) -> 
      std::vector< std::vector< int > >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_reserve(...) SwigVectorIntVector_reserve(SwigVectorIntVector self, std::vector<
      std::vector< int > >::size_type n)
 |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorIntVector_size(...) SwigVectorIntVector_size(SwigVectorIntVector self) -> 
      std::vector< std::vector< int > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_swap(...) SwigVectorIntVector_swap(SwigVectorIntVector self, 
      SwigVectorIntVector v)
 |  |  | 
    |  | 
        
          | SwigVectorIntVector_swiginit(...) |  |  | 
    |  | 
        
          | SwigVectorIntVector_swigregister(...) |  |  | 
    |  | 
        
          | SwigVectorSizetVector___bool__(...) SwigVectorSizetVector___bool__(SwigVectorSizetVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector___delitem__(...) __delitem__(std::vector< std::vector< size_t > 
      >::difference_type i) 
      SwigVectorSizetVector___delitem__(SwigVectorSizetVector self, 
      PySliceObject * slice)
 |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorSizetVector___getitem__(...) __getitem__(PySliceObject * slice) -> SwigVectorSizetVector 
      SwigVectorSizetVector___getitem__(SwigVectorSizetVector self, 
      std::vector< std::vector< size_t > >::difference_type i) 
      -> SwigSizetVector
 |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorSizetVector___len__(...) SwigVectorSizetVector___len__(SwigVectorSizetVector self) -> 
      std::vector< std::vector< size_t > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector___nonzero__(...) SwigVectorSizetVector___nonzero__(SwigVectorSizetVector self) -> 
      bool
 |  |  | 
    |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorSizetVector_append(...) SwigVectorSizetVector_append(SwigVectorSizetVector self, 
      SwigSizetVector x)
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_assign(...) SwigVectorSizetVector_assign(SwigVectorSizetVector self, 
      std::vector< std::vector< size_t > >::size_type n, 
      SwigSizetVector x)
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_back(...) SwigVectorSizetVector_back(SwigVectorSizetVector self) -> 
      SwigSizetVector
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_begin(...) SwigVectorSizetVector_begin(SwigVectorSizetVector self) -> 
      std::vector< std::vector< size_t > >::iterator
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_capacity(...) SwigVectorSizetVector_capacity(SwigVectorSizetVector self) -> 
      std::vector< std::vector< size_t > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_clear(...) SwigVectorSizetVector_clear(SwigVectorSizetVector self)
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_empty(...) SwigVectorSizetVector_empty(SwigVectorSizetVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_end(...) SwigVectorSizetVector_end(SwigVectorSizetVector self) -> 
      std::vector< std::vector< size_t > >::iterator
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_erase(...) erase(std::vector< std::vector< size_t > >::iterator pos) -> std::vector< std::vector< size_t > >::iterator...
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_front(...) SwigVectorSizetVector_front(SwigVectorSizetVector self) -> 
      SwigSizetVector
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_get_allocator(...) SwigVectorSizetVector_get_allocator(SwigVectorSizetVector self) ->
      std::vector< std::vector< size_t > >::allocator_type
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_insert(...) insert(std::vector< std::vector< size_t > >::iterator pos, SwigSizetVector x) -> std::vector< std::vector< size_t > >::iterator...
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_iterator(...) SwigVectorSizetVector_iterator(SwigVectorSizetVector self) -> 
      SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_pop(...) SwigVectorSizetVector_pop(SwigVectorSizetVector self) -> 
      SwigSizetVector
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_pop_back(...) SwigVectorSizetVector_pop_back(SwigVectorSizetVector self)
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_push_back(...) SwigVectorSizetVector_push_back(SwigVectorSizetVector self, 
      SwigSizetVector x)
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_rbegin(...) SwigVectorSizetVector_rbegin(SwigVectorSizetVector self) -> 
      std::vector< std::vector< size_t > >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_rend(...) SwigVectorSizetVector_rend(SwigVectorSizetVector self) -> 
      std::vector< std::vector< size_t > >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_reserve(...) SwigVectorSizetVector_reserve(SwigVectorSizetVector self, 
      std::vector< std::vector< size_t > >::size_type n)
 |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorSizetVector_size(...) SwigVectorSizetVector_size(SwigVectorSizetVector self) -> 
      std::vector< std::vector< size_t > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_swap(...) SwigVectorSizetVector_swap(SwigVectorSizetVector self, 
      SwigVectorSizetVector v)
 |  |  | 
    |  | 
        
          | SwigVectorSizetVector_swiginit(...) |  |  | 
    |  | 
        
          | SwigVectorSizetVector_swigregister(...) |  |  | 
    |  | 
        
          | SwigVectorStringVector___bool__(...) SwigVectorStringVector___bool__(SwigVectorStringVector self) -> 
      bool
 |  |  | 
    |  | 
        
          | SwigVectorStringVector___delitem__(...) __delitem__(std::vector< std::vector< std::string > 
      >::difference_type i) 
      SwigVectorStringVector___delitem__(SwigVectorStringVector self, 
      PySliceObject * slice)
 |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorStringVector___getitem__(...) __getitem__(PySliceObject * slice) -> SwigVectorStringVector 
      SwigVectorStringVector___getitem__(SwigVectorStringVector self, 
      std::vector< std::vector< std::string > 
      >::difference_type i) -> SwigStringVector
 |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorStringVector___len__(...) SwigVectorStringVector___len__(SwigVectorStringVector self) -> 
      std::vector< std::vector< std::string > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorStringVector___nonzero__(...) SwigVectorStringVector___nonzero__(SwigVectorStringVector self) ->
      bool
 |  |  | 
    |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorStringVector_append(...) SwigVectorStringVector_append(SwigVectorStringVector self, 
      SwigStringVector x)
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_assign(...) SwigVectorStringVector_assign(SwigVectorStringVector self, std::vector< std::vector< std::string > >::size_type n, ...
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_back(...) SwigVectorStringVector_back(SwigVectorStringVector self) -> 
      SwigStringVector
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_begin(...) SwigVectorStringVector_begin(SwigVectorStringVector self) -> 
      std::vector< std::vector< std::string > >::iterator
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_capacity(...) SwigVectorStringVector_capacity(SwigVectorStringVector self) -> 
      std::vector< std::vector< std::string > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_clear(...) SwigVectorStringVector_clear(SwigVectorStringVector self)
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_empty(...) SwigVectorStringVector_empty(SwigVectorStringVector self) -> bool
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_end(...) SwigVectorStringVector_end(SwigVectorStringVector self) -> 
      std::vector< std::vector< std::string > >::iterator
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_erase(...) erase(std::vector< std::vector< std::string > >::iterator pos) -> std::vector< std::vector< std::string > >::iterator...
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_front(...) SwigVectorStringVector_front(SwigVectorStringVector self) -> 
      SwigStringVector
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_get_allocator(...) SwigVectorStringVector_get_allocator(SwigVectorStringVector self) 
      -> std::vector< std::vector< std::string > 
      >::allocator_type
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_insert(...) insert(std::vector< std::vector< std::string > >::iterator pos, SwigStringVector x) -> std::vector< std::vector< std::string > >::iterator...
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_iterator(...) SwigVectorStringVector_iterator(SwigVectorStringVector self) -> 
      SwigPyIterator
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_pop(...) SwigVectorStringVector_pop(SwigVectorStringVector self) -> 
      SwigStringVector
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_pop_back(...) SwigVectorStringVector_pop_back(SwigVectorStringVector self)
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_push_back(...) SwigVectorStringVector_push_back(SwigVectorStringVector self, 
      SwigStringVector x)
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_rbegin(...) SwigVectorStringVector_rbegin(SwigVectorStringVector self) -> 
      std::vector< std::vector< std::string > 
      >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_rend(...) SwigVectorStringVector_rend(SwigVectorStringVector self) -> 
      std::vector< std::vector< std::string > 
      >::reverse_iterator
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_reserve(...) SwigVectorStringVector_reserve(SwigVectorStringVector self, 
      std::vector< std::vector< std::string > >::size_type n)
 |  |  | 
    |  |  | 
    |  | 
        
          | SwigVectorStringVector_size(...) SwigVectorStringVector_size(SwigVectorStringVector self) -> 
      std::vector< std::vector< std::string > >::size_type
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_swap(...) SwigVectorStringVector_swap(SwigVectorStringVector self, 
      SwigVectorStringVector v)
 |  |  | 
    |  | 
        
          | SwigVectorStringVector_swiginit(...) |  |  | 
    |  | 
        
          | SwigVectorStringVector_swigregister(...) |  |  | 
    |  | 
        
          | delete_PhpAlignCore(...) delete_PhpAlignCore(PhpAlignCore self)
 |  |  | 
    |  | 
        
          | delete_PhpAtomClassDescriptions(...) delete_PhpAtomClassDescriptions(PhpAtomClassDescriptions self)
 |  |  | 
    |  | 
        
          | delete_PhpComplex(...) delete_PhpComplex(PhpComplex self)
 |  |  | 
    |  | 
        
          | delete_PhpDeltaHypo(...) delete_PhpDeltaHypo(PhpDeltaHypo self)
 |  |  | 
    |  | 
        
          | delete_PhpDeltaHypoSite(...) delete_PhpDeltaHypoSite(PhpDeltaHypoSite self)
 |  |  | 
    |  | 
        
          | delete_PhpException(...) delete_PhpException(PhpException self)
 |  |  | 
    |  | 
        
          | delete_PhpExclVol(...) delete_PhpExclVol(PhpExclVol self)
 |  |  | 
    |  | 
        
          | delete_PhpExclVolSphere(...) delete_PhpExclVolSphere(PhpExclVolSphere self)
 |  |  | 
    |  | 
        
          | delete_PhpFastShape(...) delete_PhpFastShape(PhpFastShape self)
 |  |  | 
    |  | 
        
          | delete_PhpFastShapePair(...) delete_PhpFastShapePair(PhpFastShapePair self)
 |  |  | 
    |  | 
        
          | delete_PhpFeatureClassDescriptions(...) delete_PhpFeatureClassDescriptions(PhpFeatureClassDescriptions self)
 |  |  | 
    |  | 
        
          | delete_PhpFeatureData(...) delete_PhpFeatureData(PhpFeatureData self)
 |  |  | 
    |  | 
        
          | delete_PhpFeatureDefinition(...) delete_PhpFeatureDefinition(PhpFeatureDefinition self)
 |  |  | 
    |  | 
        
          | delete_PhpFeaturePattern(...) delete_PhpFeaturePattern(PhpFeaturePattern self)
 |  |  | 
    |  | 
        
          | delete_PhpFeatureRules(...) delete_PhpFeatureRules(PhpFeatureRules self)
 |  |  | 
    |  | 
        
          | delete_PhpHiCluster(...) delete_PhpHiCluster(PhpHiCluster self)
 |  |  | 
    |  | 
        
          | delete_PhpHiClusterPair(...) delete_PhpHiClusterPair(PhpHiClusterPair self)
 |  |  | 
    |  | 
        
          | delete_PhpHypoAdaptor(...) delete_PhpHypoAdaptor(PhpHypoAdaptor self)
 |  |  | 
    |  | 
        
          | delete_PhpIntCoord(...) delete_PhpIntCoord(PhpIntCoord self)
 |  |  | 
    |  | 
        
          | delete_PhpProject(...) delete_PhpProject(PhpProject self)
 |  |  | 
    |  | 
        
          | delete_PhpQSAR(...) delete_PhpQSAR(PhpQSAR self)
 |  |  | 
    |  | 
        
          | delete_PhpQSARModel(...) delete_PhpQSARModel(PhpQSARModel self)
 |  |  | 
    |  | 
        
          | delete_PhpSite(...) delete_PhpSite(PhpSite self)
 |  |  | 
    |  | 
        
          | delete_PhpSiteConstrainer(...) delete_PhpSiteConstrainer(PhpSiteConstrainer self)
 |  |  | 
    |  | 
        
          | delete_PhpSiteConstraint(...) delete_PhpSiteConstraint(PhpSiteConstraint self)
 |  |  | 
    |  | 
        
          | delete_PhpSiteMask(...) delete_PhpSiteMask(PhpSiteMask self)
 |  |  | 
    |  | 
        
          | delete_PhpSiteMaskData(...) delete_PhpSiteMaskData(PhpSiteMaskData self)
 |  |  | 
    |  | 
        
          | delete_PhpSiteMaskGroup(...) delete_PhpSiteMaskGroup(PhpSiteMaskGroup self)
 |  |  | 
    |  | 
        
          | delete_PhpVolCoords(...) delete_PhpVolCoords(PhpVolCoords self)
 |  |  | 
    |  | 
        
          | delete_SwigDoubleVector(...) delete_SwigDoubleVector(SwigDoubleVector self)
 |  |  | 
    |  | 
        
          | delete_SwigIntVector(...) delete_SwigIntVector(SwigIntVector self)
 |  |  | 
    |  | 
        
          | delete_SwigPyIterator(...) delete_SwigPyIterator(SwigPyIterator self)
 |  |  | 
    |  | 
        
          | delete_SwigSizetVector(...) delete_SwigSizetVector(SwigSizetVector self)
 |  |  | 
    |  | 
        
          | delete_SwigStringVector(...) delete_SwigStringVector(SwigStringVector self)
 |  |  | 
    |  | 
        
          | delete_SwigVectorDoubleVector(...) delete_SwigVectorDoubleVector(SwigVectorDoubleVector self)
 |  |  | 
    |  | 
        
          | delete_SwigVectorIntVector(...) delete_SwigVectorIntVector(SwigVectorIntVector self)
 |  |  | 
    |  | 
        
          | delete_SwigVectorSizetVector(...) delete_SwigVectorSizetVector(SwigVectorSizetVector self)
 |  |  | 
    |  | 
        
          | delete_SwigVectorStringVector(...) delete_SwigVectorStringVector(SwigVectorStringVector self)
 |  |  | 
    | std::string | 
        
          | getDefaultFdFileBaseName() |  |  | 
    | std::string |  | 
    |  | 
        
          | getLongLine(...) getLongLine(std::istream & istr, std::string & s) -> 
      std::istream &
 |  |  | 
    |  | 
        
          | getTopoDistanceMatrix(...) getTopoDistanceMatrix(MM_Index ctHandle) -> SwigVectorIntVector 
      getTopoDistanceMatrix(MM_Index ctHandle, SwigVectorIntVector 
      brokenBonds) -> SwigVectorIntVector
 |  |  | 
    |  | 
        
          | new_PhpAlignCore(...) PhpAlignCore(MM_Index ctHandleA, MM_Index ctHandleB, std::string const & smarts, bool allowStereoFailure=False, ...
 |  |  | 
    | PhpAtomClassDescriptions | 
        
          | new_PhpAtomClassDescriptions() |  |  | 
    |  | 
        
          | new_PhpComplex() new_PhpComplex(PhpComplex rhs) -> PhpComplex
 |  |  | 
    |  | 
        
          | new_PhpDeltaHypo() new_PhpDeltaHypo(PhpDeltaHypo rhs) -> PhpDeltaHypo
 |  |  | 
    | PhpDeltaHypoSite |  | 
    |  | 
        
          | new_PhpException() PhpException(PhpException rhs) PhpException(std::string const & 
      message) new_PhpException(std::string const & message, int 
      err_code) -> PhpException
 |  |  | 
    |  | 
        
          | new_PhpExclVol() new_PhpExclVol(PhpExclVol rhs) -> PhpExclVol
 |  |  | 
    | PhpExclVolSphere |  | 
    |  | 
        
          | new_PhpFastShape(...) PhpFastShape(SwigVectorDoubleVector xyz, SwigDoubleVector r, int norm=1, int maxMap=8, int maxAlt=1)...
 |  |  | 
    | PhpFastShapePair |  | 
    | PhpFeatureClassDescriptions | 
        
          | new_PhpFeatureClassDescriptions() |  |  | 
    |  | 
        
          | new_PhpFeatureData() new_PhpFeatureData(PhpFeatureData rhs) -> PhpFeatureData
 |  |  | 
    |  | 
        
          | new_PhpFeatureDefinition() new_PhpFeatureDefinition(PhpFeatureDefinition rhs) -> 
      PhpFeatureDefinition
 |  |  | 
    |  | 
        
          | new_PhpFeaturePattern() new_PhpFeaturePattern(PhpFeaturePattern rhs) -> PhpFeaturePattern
 |  |  | 
    |  | 
        
          | new_PhpFeatureRules() new_PhpFeatureRules(PhpFeatureRules rhs) -> PhpFeatureRules
 |  |  | 
    |  | 
        
          | new_PhpHiCluster() new_PhpHiCluster(PhpHiCluster rhs) -> PhpHiCluster
 |  |  | 
    | PhpHiClusterPair |  | 
    |  |  | 
    | PhpIntCoord |  | 
    | PhpProject |  | 
    |  | 
        
          | new_PhpQSAR() new_PhpQSAR(PhpQSAR rhs) -> PhpQSAR
 |  |  | 
    | PhpQSARModel |  | 
    |  | 
        
          | new_PhpSite() PhpSite(size_t a_number) PhpSite(std::string const & a_type) 
      new_PhpSite(PhpSite arg1) -> PhpSite
 |  |  | 
    |  | 
        
          | new_PhpSiteConstrainer() new_PhpSiteConstrainer(PhpSiteConstrainer rhs) -> 
      PhpSiteConstrainer
 |  |  | 
    |  | 
        
          | new_PhpSiteConstraint() PhpSiteConstraint(SwigIntVector u_siteIndices, std::string const 
      & u_siteTypes, double u_value, double u_tol) 
      new_PhpSiteConstraint(PhpSiteConstraint rhs) -> PhpSiteConstraint
 |  |  | 
    |  | 
        
          | new_PhpSiteMask() new_PhpSiteMask(PhpSiteMask rhs) -> PhpSiteMask
 |  |  | 
    |  | 
        
          | new_PhpSiteMaskData() PhpSiteMaskData(int u_siteNumber, char u_siteType, int u_maskValue) 
      new_PhpSiteMaskData(PhpSiteMaskData rhs) -> PhpSiteMaskData
 |  |  | 
    |  | 
        
          | new_PhpSiteMaskGroup() PhpSiteMaskGroup(SwigIntVector u_siteIndices, size_t minMatch, size_t
      groupNumber) new_PhpSiteMaskGroup(PhpSiteMaskGroup rhs) -> 
      PhpSiteMaskGroup
 |  |  | 
    | PhpVolCoords |  | 
    |  | 
        
          | new_SwigDoubleVector() SwigDoubleVector(SwigDoubleVector arg2) 
      SwigDoubleVector(std::vector< double >::size_type size) 
      new_SwigDoubleVector(std::vector< double >::size_type size, 
      std::vector< double >::value_type const & value) -> 
      SwigDoubleVector
 |  |  | 
    |  | 
        
          | new_SwigIntVector() SwigIntVector(SwigIntVector arg2) SwigIntVector(std::vector< int 
      >::size_type size) new_SwigIntVector(std::vector< int 
      >::size_type size, std::vector< int >::value_type const 
      & value) -> SwigIntVector
 |  |  | 
    |  | 
        
          | new_SwigSizetVector() SwigSizetVector(SwigSizetVector arg2) SwigSizetVector(std::vector<
      size_t >::size_type size) new_SwigSizetVector(std::vector< 
      size_t >::size_type size, std::vector< size_t >::value_type 
      const & value) -> SwigSizetVector
 |  |  | 
    |  | 
        
          | new_SwigStringVector() SwigStringVector(SwigStringVector arg2) 
      SwigStringVector(std::vector< std::string >::size_type size) 
      new_SwigStringVector(std::vector< std::string >::size_type 
      size, std::vector< std::string >::value_type const & value)
      -> SwigStringVector
 |  |  | 
    |  | 
        
          | new_SwigVectorDoubleVector() SwigVectorDoubleVector(SwigVectorDoubleVector arg2) 
      SwigVectorDoubleVector(std::vector< std::vector< double > 
      >::size_type size) new_SwigVectorDoubleVector(std::vector< 
      std::vector< double > >::size_type size, SwigDoubleVector 
      value) -> SwigVectorDoubleVector
 |  |  | 
    |  | 
        
          | new_SwigVectorIntVector() SwigVectorIntVector(SwigVectorIntVector arg2) 
      SwigVectorIntVector(std::vector< std::vector< int > 
      >::size_type size) new_SwigVectorIntVector(std::vector< 
      std::vector< int > >::size_type size, SwigIntVector value) 
      -> SwigVectorIntVector
 |  |  | 
    |  | 
        
          | new_SwigVectorSizetVector() SwigVectorSizetVector(SwigVectorSizetVector arg2) 
      SwigVectorSizetVector(std::vector< std::vector< size_t > 
      >::size_type size) new_SwigVectorSizetVector(std::vector< 
      std::vector< size_t > >::size_type size, SwigSizetVector 
      value) -> SwigVectorSizetVector
 |  |  | 
    |  | 
        
          | new_SwigVectorStringVector() SwigVectorStringVector(SwigVectorStringVector arg2) 
      SwigVectorStringVector(std::vector< std::vector< std::string 
      > >::size_type size) new_SwigVectorStringVector(std::vector<
      std::vector< std::string > >::size_type size, 
      SwigStringVector value) -> SwigVectorStringVector
 |  |  | 
    |  | 
        
          | tokenizeDelimitedString(...) tokenizeDelimitedString(std::string const & s, char sep=',') 
      -> SwigStringVector
 |  |  |