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__init__(self,
st,
verbose=False,
frag_min_atoms=150)
Add caps to uncapped terminal residues in the input structure 'st'. |
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capSequences(self,
st)
Cap both ends of each sequence in the given structure. |
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cappedResidues(self)
Returns residue strings for residues that were capped. |
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capResidues(self)
Returns residue strings for the added cap residues. |
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_getLowerName(self,
residue)
Return resnum & inscode corresponding with the residue that would
be lower in sequence than the specified residue. |
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_getHigherName(self,
residue)
Return resnum & inscode corresponding to a residue which would be
one higher in sequence than the input residue. |
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_addCCap(self,
residue)
Add a NMA residue to the ' C ' atom of the specified residue |
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adjustDihedral(self,
st,
atom1,
atom2,
atom3,
atom4)
Adjust dihedral between the original residue and the cap to 0
degrees. |
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resCapped(self,
residue,
capres)
Record this capping in the internal lists. |
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attachCap(self,
residue,
fromatom,
replace_atom,
fragname)
Attaches the specified fragment and returns the new Residue object |
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_addNCap(self,
residue)
Add an ACE residue to " N " atom of the specified residue |
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