schrodinger.application.combiglide.connection

Class ConnectionStorage

This class is used to store the data of the current connection table.

Instance Methods

[hide private]

__init__(self)
x.__init__(...) initializes x; see help(type(x)) for signature

__iter__(self)

reset(self)

collectionChanged(self)

hasChanged(self)

changesSaved(self)

addPair(self, bp, name='', csize=0, minlink=0, maxlink=0, cfile=0, bondToH=False, selected=False)
Adds a bond pair to the list of bond pairs, and also creates a more or less empty data line for that data.

bondPair(self, a1, a2)

switchPair(self, bp, newbp=False)

changePair(self, oldbp, newbp)

deletePair(self, bp)

setData(self, bp, name, csize, minlink, maxlink, cfile, row, bondToH, selected)

setConnectionName(self, bp, cname)

setConnectionSize(self, bp, csize)

setConnectionMinLink(self, bp, minlink)

setConnectionMaxLink(self, bp, maxlink)

setConnectionFile(self, bp, cfile)

setRow(self, bp, row)

setSelected(self, bp, selected)

getConnectionName(self, bp)

getConnectionSize(self, bp)

getConnectionMinLink(self, bp)

getConnectionMaxLink(self, bp)

getConnectionFile(self, bp)

getRow(self, bp)

bondToH(self, bp)

getSelected(self, bp)

clearSelected(self)

size(self)

getPairFromRow(self, num)

getBondColorList(self)

containsMultipleCores(self)

list

getConnectionColor(self, i)
Return the appropriate connection color for the i-th connection

setIgnorePair(self, bp)

removeIgnorePair(self)

getBondList(self)

getBondListWithIgnored(self)

getAtomList(self)

getCompleteBondList(self)

getAtomColorList(self)

Inherited from Qt.QtCore.QObject: connect, emit

Inherited from PyQt4.QtCore.QObject: __getattr__, blockSignals, childEvent, children, connectNotify, customEvent, deleteLater, destroyed, disconnect, disconnectNotify, dumpObjectInfo, dumpObjectTree, dynamicPropertyNames, event, eventFilter, findChild, findChildren, inherits, installEventFilter, isWidgetType, killTimer, metaObject, moveToThread, objectName, parent, property, pyqtConfigure, receivers, removeEventFilter, sender, senderSignalIndex, setObjectName, setParent, setProperty, signalsBlocked, startTimer, thread, timerEvent, tr, trUtf8

Inherited from sip.simplewrapper: __new__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

Inherited from PyQt4.QtCore.QObject: staticMetaObject

init(self)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

addPair(self, bp, name=`''`, csize=0, minlink=0, maxlink=0, cfile=0, bondToH=False, selected=False)

Adds a bond pair to the list of bond pairs, and also creates a more or less empty data line for that data. Data in array: [Attachment name, collection size, min linkers, max linkers, collection file, table row]

getConnectionColor(self, i)

Return the appropriate connection color for the i-th connection

Parameters:

i (int) - The connection number to get the color for

Returns: list

The appropriate color, formatted as a list of three integers between 0 and 255

Class ConnectionStorage

__init__(self) (Constructor)

addPair(self, bp, name='', csize=0, minlink=0, maxlink=0, cfile=0, bondToH=False, selected=False)

getConnectionColor(self, i)

init(self)
(Constructor)

addPair(self, bp, name=`''`, csize=0, minlink=0, maxlink=0, cfile=0, bondToH=False, selected=False)