Package schrodinger :: Package application :: Package matsci :: Module desmondutils :: Class MSAnalysisMSJStringer
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Class MSAnalysisMSJStringer

 object --+    
          |    
MSJStringer --+
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             MSAnalysisMSJStringer

An MSJStringer class for MS MD Analysis stages

Instance Methods [hide private]
 
__init__(self, analysis_type=None, **kwargs)
Create a MSAnalysisMSJStringer object
str
getTitle(self)
Return a title for the stage describing the main parameters.

Inherited from MSJStringer: createString, formLine

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]

Inherited from MSJStringer: ANALYSIS, ANALYSIS_TYPE, CHECKPOINT, COMPRESS, DIR, DOT, ENSEMBLE, ENSEMBLE_CLASS, ENSEMBLE_METHOD, INDENT, INTERVAL, JOBNAME, KNOWN_LINES, LINE_ORDER, MAX_STEPS, MINIMIZE, MSJ_BASE, MSJ_LAST, OTHERS, PADDING, PRESSURE, SETTINGS, SIMULATE, SYSBUILD, TEMP, TIME, TIMESTEP

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, analysis_type=None, **kwargs)
(Constructor)

 

Create a MSAnalysisMSJStringer object

Any keyword that does not have a value supplied will use the default Desmond value for MD simulations.

Parameters:
  • analysis_type (str) - A string in the form of [ property property ] that lists the properties to be computed in the analysis.

    All other keyword arguments are turned into lines in the .msj file. See parent class for additional information.

Overrides: object.__init__

getTitle(self)

 

Return a title for the stage describing the main parameters.

Returns: str
The title for this stage
Overrides: MSJStringer.getTitle