Class ModelSystemPanel

Class to draw the model-system-creation panel

Instance Methods

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__init__(self, master, task_mode)

navbar_toggle(self, stat)
Adjusts the guide bar based on the given `stat'.

initialize(self, dummy=None)
Resets/initializes the panel and the model system.

navbar_cmd_chop(self, btn_relief)
This function responds to the click event on the `Chop' guide button.

navbar_cmd_neut(self, btn_relief, shld_update_display=True)
This function responds to the click event on the `Neutralize' guide button.

navbar_cmd_flex(self, btn_relief, shld_update_display=True)
This function responds to the click event on the `Constrain' guide button.

navbar_cmd_monitor(self, btn_relief, shld_update_display=True)
This function responds to the click event on the `Create Model' guide button.

import_display_update(self)
Updates the workspace and guide bar for the structure-importing panel.

chop_display_update(self)
Updates the workspace and guide bar for the chop/cap panel.

neut_display_update(self)
Updates the workspace and guide bar for the neutralization panel.

flex_display_update(self)
Updates the workspace and guide bar for the contraint panel.

disp_opt_update(self)
Refreshes the display-option panel.

clean_ws(self)

display(self)
Displays all currently imported molecules in Maestro workspace.

display_toggle(self)
Hides or shows the available structures.

_play_movie(self)

display_movie(self)
Displays the emulated perturbation movie.

settings(self)
Returns a dictionary of job settings by name used in `mcpro_driver.py'

Class Variables

[hide private]

DISPLAY_OPT = [["Animate ligand perturbation", "Ligand", "Pert...

Method Details

[hide private]

display_movie(self)

Displays the emulated perturbation movie. The movie needs to be generated on the fly since the user can at any point change the ligand structures.

Class Variable Details

[hide private]

DISPLAY_OPT

Value:

[["Animate ligand perturbation", "Ligand", "Perturbed ligand", "Refere
nce ligand", "Protein",], ["Animate ligand perturbation", "Ligand", "P
erturbed ligand",], ["Protein", "Reference ligand",], ["Zmatrix",],]