Class ImportSumfile
Method to read all data from current summary/monitor file and return
the status and properties of interest in a hash. Available properties
are: stage nmol edge1 edge2 edge3 rcut naccpt nreject mxcon ncon t oldE
newE rdel adel vdel p nvchg vold vnew nschg scut nschg2 ncent1 ncent2
rdels1 rdels2 adels1 adels2 esold esone wimax wkc exxold exxnew dielec
cutoffe ebndol ebndne eangol eangne edihol edihne enbol enbne ebcold
ebcnew nresdu nfixrs coul14 vdw14 cutnb rc0 rc1 rc2 ave_total_energy
ave_total_cp ave_alpha ave_kappa ave_volume
ave_solu_solv_energy_ref_solute ave_solu_solv_energy_1st_solute_pert
ave_solu_solv_energy_2nd_solute_pert ave_solu_solu_energy_ref_solute
ave_solu_solu_energy_1st_solute_pert ave_solu_solu_energy_2nd_solute_pert
ave_bnd_energy_ref_solute ave_bnd_energy_1st_solute_pert
ave_bnd_energy_2nd_solute_pert ave_ang_energy_ref_solute
ave_ang_energy_1st_solute_pert ave_ang_energy_2nd_solute_pert
ave_tor_energy_ref_solute ave_tor_energy_1st_solute_pert
ave_tor_energy_2nd_solute_pert ave_nb_energy_ref_solute
ave_nb_energy_1st_solute_pert ave_nb_energy_2nd_solute_pert
ave_cons_energy_ref_solute ave_cons_energy_1st_solute_pert
ave_cons_energy_2nd_solute_pert ave_delta_1st_solute_pert
ave_delta_2nd_solute_pert ave_delG_1st_solute_pert
ave_delG_2nd_solute_pert ave_delH_1st_solute_pert
ave_delH_2nd_solute_pert ave_delS_1st_solute_pert
ave_delS_2nd_solute_pert soluteN soluteN_solvent_vdw_energy
soluteN_solvent_coul_energy soluteN_solvent_total_energy
soluteN_solute_vdw_energy soluteN_solute_coul_energy
soluteN_solute_total_energy soluteN_bnd_energy soluteN_ang_energy
soluteN_tor_energy soluteN_nb_energy soluteN_total_energy
ave_dipole_ref_soluteN ave_dipole_1st_pert_soluteN
ave_dipole_2nd_pert_soluteN ave_donor_hbonds_soluteN_solv
ave_acc_hbonds_soluteN_solv ave_donor_hbonds_soluteN_solu
ave_acc_hbonds_soluteN_solu nattmp_solu1 naccep_solu1 nattmp_solu2
naccep_solu2
total_energy_blocks inter_cp volume enthalpy kappa alpha exx esx
total_energy_stdev inter_cp_stdev volume_stdev enthalpy_stdev kappa_stdev
alpha_stdev exx_stdev esx_stdev total_energy_ave inter_cp_ave volume_ave
enthalpy_ave kappa_ave alpha_ave exx_ave exx1 esx1 delg1 exx2 esx2 delg2
exx1_stdev esx1_stdev delg1_stdev exx2_stdev esx2_stdev delg2_stdev
exx1_ave esx1_ave delg1_ave exx2_ave esx2_ave delg2_ave ebnd_ref
ebnd_1st_pert ebnd_2nd_pert eang_ref eang_1st_pert eang_2nd_pert
ebnd_ref_stdev ebnd_1st_pert_stdev ebnd_2nd_pert_stdev eang_ref_stdev
eang_1st_pert_stdev eang_2nd_pert_stdev ebnd_ref_ave ebnd_1st_pert_ave
ebnd_2nd_pert_ave eang_ref_ave eang_1st_pert_ave eang_2nd_pert_ave
etor_ref etor_1st_pert etor_2nd_pert enb_ref enb_1st_pert enb_2nd_pert
etor_ref_stdev etor_1st_pert_stdev etor_2nd_pert_stdev enb_ref_stdev
enb_1st_pert_stdev enb_2nd_pert_stdev etor_ref_ave etor_1st_pert_ave
etor_2nd_pert_ave enb_ref_ave enb_1st_pert_ave enb_2nd_pert_ave sasa
volume phob_sasa philic_sasa arom_sasa weak_polar_sasa sasa_stdev
volume_stdev phob_sasa_stdev philic_sasa_stdev arom_sasa_stdev
weak_polar_sasa_stdev sasa_ave volume_ave phob_sasa_ave philic_sasa_ave
arom_sasa_ave weak_polar_sasa_ave esx_soluteN_coul esx_soluteN_vdw
exx_soluteN_coul exx_soluteN_vdw esx_soluteN_coul_stdev
esx_soluteN_vdw_stdev exx_soluteN_coul_stdev exx_soluteN_vdw_stdev
esx_soluteN_coul_ave esx_soluteN_vdw_ave exx_soluteN_coul_ave
exx_soluteN_vdw_ave delg_1st_pert delh_1st_pert dels_1st_pert
delg_2nd_pert delh_2nd_pert dels_2nd_pert delg_1st_pert_stdev
delh_1st_pert_stdev dels_1st_pert_stdev delg_2nd_pert_stdev
delh_2nd_pert_stdev dels_2nd_pert_stdev delg_1st_pert_ave
delh_1st_pert_ave dels_1st_pert_ave delg_2nd_pert_ave delh_2nd_pert_ave
dels_2nd_pert_ave
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__init__(self,
infile)
constructor |
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import_all_data(self)
Method to import all data and return it in a hash |
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