Package schrodinger :: Package application :: Package msv :: Package domain :: Module align :: Class BasicAligner

Class BasicAligner

     object --+    
              |    
AbstractAligner --+
                  |
                 BasicAligner

Aligns sequences by simply adding gaps to the ends of sequences to make them the same length

Instance Methods

run(self, aln)
Aligns the sequences in an alignment using the parameters supplied on init

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

Inherited from object: __class__

Method Details

Aligns the sequences in an alignment using the parameters supplied on init

Subclasses need to override this default implementation.

Parameters:

(inherited documentation)