Package schrodinger :: Package application :: Package msv :: Package domain :: Module annotation :: Class ProteinSequenceAnnotations
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Class ProteinSequenceAnnotations

         object --+    
                  |    
SequenceAnnotations --+
                      |
                     ProteinSequenceAnnotations

hash(x)

Nested Classes [hide private]
  ANNOTATION_TYPES
Instance Methods [hide private]
 
__init__(self, seq)
x.__init__(...) initializes x; see help(type(x)) for signature
 
addDisulfideBond(self, pair1, pair2)
Add a disulfide bond between (sequence, residue) pairs
 
getSparseRescodes(self, modulo)

Inherited from SequenceAnnotations: __getattr__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]
  disulfide_bonds
  inscode
  resnum

Inherited from object: __class__

Method Details [hide private]

__init__(self, seq)
(Constructor)

 

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__
(inherited documentation)

addDisulfideBond(self, pair1, pair2)

 

Add a disulfide bond between (sequence, residue) pairs

Make the sequence the same in both pairs to create an intra sequence disulfide bond and different for an inter sequence bond

Parameters:
  • pair1 - tuple of (sequence.ProteinSequence, Residue) instances
  • pair2 - tuple of (sequence.ProteinSequence, Residue) instances

Property Details [hide private]

disulfide_bonds

Get Method:
unreachable.disulfide_bonds(self)

inscode

Get Method:
unreachable.inscode(self)
Set Method:
unreachable.inscode(self, codes)

resnum

Get Method:
unreachable.resnum(self)
Set Method:
unreachable.resnum(self, nums)