Class SolventAccessibleSurfaceAreaByResidue

      object --+        
               |        
GeomAnalyzerBase --+    
                   |    
    _MaestroAnalysis --+
                       |
                      SolventAccessibleSurfaceAreaByResidue

Calculate the relative SASA broken down by residues. The values are relative to the average SASAs as given by SolventAccessibleSurfaceAreaByResidue.DIPEPTIDE_SASA.

The result is a 2-tuple: ([residue-names], [relative-SASAs]).

Instance Methods

[hide private]

__init__(self, msys_model, cms_model, asl, resolution=None)
x.__init__(...) initializes x; see help(type(x)) for signature

_postcalc(self, calc, *_)

Inherited from _MaestroAnalysis (private): _precalc

Inherited from GeomAnalyzerBase: __call__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

DIPEPTIDE_SASA = {"ACE":(115.4897, 3.5972), "NMA":(97.3748, 4....

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, msys_model, cms_model, asl, resolution=None)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

_postcalc(self, calc, *_)

Overrides: GeomAnalyzerBase._postcalc: (inherited documentation)

Class Variable Details

[hide private]

DIPEPTIDE_SASA

Value:

{"ACE":(115.4897, 3.5972), "NMA":(97.3748, 4.0446), "ALA":(128.7874, 4
.7150), "ARG":(271.5978, 9.5583), "ASH":(175.7041, 5.1167), "ASN":(179
.5393, 4.6320), "ASP":(173.4664, 6.9882), "CYS":(158.1909, 5.3923), "C
YX":(99.3829, 10.7089), "GLH":(203.2443, 6.2765), "GLN":(208.6171, 6.5
794), "GLU":(201.4660, 6.9328), "GLY":(94.1021, 5.1977), "HIE":(218.79
90, 5.6097), "HID":(208.8269, 5.9202), "HIP":(221.1223, 8.3364), "ILE"
:(207.2248, 5.0012), "LEU":(211.8823, 5.1490), "LYN":(235.5351, 6.8589
), "LYS":(242.8734, 9.3510), "MET":(218.5396, 6.9879), "PHE":(243.4793
...

Class SolventAccessibleSurfaceAreaByResidue

__init__(self, msys_model, cms_model, asl, resolution=None) (Constructor)

_postcalc(self, calc, *_)

DIPEPTIDE_SASA

init(self, msys_model, cms_model, asl, resolution=None)
(Constructor)