Package schrodinger :: Package application :: Package phase :: Module constants

Module constants

Module defining Phase-related constants that are shared between scripts and other modules.

Functions

str

get_feature_text(feature_type)
This function returns a string that shows both one letter feature type as well as a long name.

PICK_CATEGORY()

Variables

[hide private]

PROJECT_LAST_SAVED_FD_FILE = 'last_saved_feature.ini'

FEATURE_A = 'A'

FEATURE_D = 'D'

FEATURE_H = 'H'

FEATURE_N = 'N'

FEATURE_P = 'P'

FEATURE_Q = 'Q'

FEATURE_R = 'R'

FEATURE_X = 'X'

FEATURE_Y = 'Y'

FEATURE_Z = 'Z'

FEATURE_TYPES = ('A', 'D', 'H', 'N', 'P', 'R', 'X', 'Y', 'Z')

STD_FEATURE_TYPES = ('A', 'D', 'H', 'N', 'P', 'R')

FEATURE_NAMES = {'A': 'Acceptor', 'D': 'Donor', 'H': 'Hydropho...

MASK_PERMITTED = 0
hash(x)

MASK_REQUIRED = 1

MASK_DISABLED = -1

MASK_NAMES = {'Disabled': -1, 'Permitted': 0, 'Required': 1}

FEATURE_COLORS = {'A': (1.0, 0.5, 0.5), 'D': (0.5, 0.8, 0.9), ...

FEATURE_TEXT_COLORS = {'A': (0.8, 0.4, 0.4), 'D': (0.392, 0.62...

SELECTED_FEATURE_COLOR = (0.0, 1.0, 1.0)

FEATURE_QCOLORS = {}

XVOL_PICK_CATEGORY = 'xvol_pick_category'

base64_properties = ['s_phasehypo_Constraints', 's_phasehypo_E...

ADDITIONAL_ROLE = ['active', 'inactive', 'train', 'test']

PHASE_IMPORTED_PHARM_SET = 's_phase_Imported_Pharm_Set'

PHASE_IMPORTED_MUST_MATCH = 'b_phase_Imported_Must_Match'

HYPO_XVOL_VISIBLE = 'b_phasehypo_ExcludedVolumesVisible'

HYPO_REFCT_VISIBLE = 'b_phasehypo_ReferenceLigandVisible'

HYPO_TOL_VISIBLE = 'b_phasehypo_ToleranceVisible'

PROP_LABELS_VISIBLE = 'b_phasehypo_PropLabelsVisible'

MANAGE_XVOL_OPEN = 'b_phasehypo_ManageXvolOpen'

PROJ_POINT_DIST = 1.8

__package__ = 'schrodinger.application.phase'

feat = 'N'

qcolor = <PyQt4.QtGui.QColor object at 0x7f5da1d33410>

rgb = (0.702, 0.169, 0.169)

Function Details

[hide private]

get_feature_text(feature_type)

This function returns a string that shows both one letter feature type as well as a long name.

Parameters:

feature_type (str) - single character feature type

Returns: str

feature text string

Variables Details

[hide private]

FEATURE_NAMES

Value:

{'A': 'Acceptor',
 'D': 'Donor',
 'H': 'Hydrophobic',
 'N': 'Negative',
 'P': 'Positive',
 'Q': 'Projected Point',
 'R': 'Aromatic Ring',
 'X': 'Custom1',
...

FEATURE_COLORS

Value:

{'A': (1.0, 0.5, 0.5),
 'D': (0.5, 0.8, 0.9),
 'H': (0.3, 1.0, 0.3),
 'N': (1.0, 0.3, 0.3),
 'P': (0.5, 0.6, 1.0),
 'Q': (1.0, 0.0, 1.0),
 'R': (0.92, 0.51, 0.2),
 'X': (0.0, 1.0, 1.0),
...

FEATURE_TEXT_COLORS

Value:

{'A': (0.8, 0.4, 0.4),
 'D': (0.392, 0.624, 0.698),
 'H': (0.2, 0.671, 0.2),
 'N': (0.702, 0.169, 0.169),
 'P': (0.376, 0.451, 0.749),
 'R': (0.8, 0.447, 0.176),
 'X': (0.0, 1.0, 1.0),
 'Y': (0.3, 0.0, 1.0),
...

base64_properties

Value:

['s_phasehypo_Constraints',
 's_phasehypo_ExcludedVolumes',
 's_phasehypo_FeatureDefinitions',
 's_phasehypo_FeatureRadii',
 's_phasehypo_FeatureRules',
 's_phasehypo_FragCts',
 's_phasehypo_FragMap',
 's_phasehypo_FragSites',
...