Package schrodinger :: Package application :: Package phase :: Module phase_markers :: Class WorkspaceSite

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Class WorkspaceSite

         object --+    
                  |    
infra.phase.PhpSite --+
                      |
                     WorkspaceSite

This is special class we use when adding sites manually in workspace. It allows us to identify custom sites using isinstance method.

Instance Methods

__init__(self)
__init__(PhpSite self) -> PhpSite __init__(PhpSite self, size_t a_number) -> PhpSite __init__(PhpSite self, std::string const & a_type) -> PhpSite __init__(PhpSite self, PhpSite arg2) -> PhpSite

list

coordinates(self, use_offset=False)
Returns site coordinates if use_offset is False.

Inherited from infra.phase.PhpSite: __eq__, __ne__, __repr__, __swig_destroy__, calculateSimilarity, distance, getCoordinates, getDisplayName, getFragType, getMaskValue, getPermitted, getProhibited, getProjCoords, getProjectedOnly, getRad, getSiteDescription, getSiteName, getSiteNumber, getSiteSimilarity, getSiteStatus, getSiteType, getSiteTypeChar, getTol, getXCoord, getXP, getYCoord, getZCoord, hasXP, setCoordinates, setDefaults, setFragType, setMaskValue, setPermitted, setProhibited, setProjCoords, setProjectedOnly, setRad, setSiteNumber, setSiteSimilarity, setSiteStatusOff, setSiteStatusOn, setSiteType, setSiteTypeChar, setStatus, setTol, setXCoord, setXP, setYCoord, setZCoord

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

Inherited from infra.phase.PhpSite: SiteStatusOff, SiteStatusOn

Properties

Inherited from infra.phase.PhpSite: thisown

Inherited from object: __class__

Method Details

init(self)
(Constructor)

__init__(PhpSite self) -> PhpSite __init__(PhpSite self, size_t a_number) -> PhpSite __init__(PhpSite self, std::string const & a_type) -> PhpSite __init__(PhpSite self, PhpSite arg2) -> PhpSite

Overrides: object.__init__: (inherited documentation)

coordinates(self, use_offset=False)

Returns site coordinates if use_offset is False. If use_offset is True z-coordinate is shifted by the constant value. This is useful when finding coordinates of projected points.

Parameters:

use_offset (bool) - if True shift z-coordinate by constant value

Returns: list

list of site coordinates