[ Identifiers | To Do | Deprecations ]

Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

B

b (in MaestroArrow)	BASIS_VALUES (in schrodinger.application.matsci.nano.particle)	BLOSUM62 (in schrodinger.application.msv.domain.constants)
b (in MaestroSphere)	basisChanged() (in InputEntriesModel)	BLOSUM80 (in schrodinger.application.msv.domain.constants)
b (in MaestroTorus)	basisChanged() (in BasisSetModel)	BLUE (in schrodinger.application.bioluminate.pml_menus)
b (in PhpFastShapePair)	basiselements (in schrodinger.application.matsci)	BLUE (in schrodinger.application.matsci.amorphous)
B2A (in schrodinger.application.matsci.espresso.utils)	basisModel() (in _BasisSelectorPopUp)	blumo_prop (in MopacResults71)
B_FACTOR (in FEPEdgeReportMaker)	basisname_in_list() (in schrodinger.application.jaguar.jaguar_keyword_utils)	BND_TOL (in schrodinger.application.mcpro.modelsystemwizard)
B_FACTOR_COLORS (in schrodinger.application.msv.gui.color)	BasisSelector (in schrodinger.application.jaguar.gui.basis_selector)	BODY_PERCENTAGE (in schrodinger.graphics3d.arrow)
B_IDX (in schrodinger.application.matsci.nano.interface_mod)	BasisSelectorLineEdit (in schrodinger.application.jaguar.gui.basis_selector)	bodyToNode() (in schrodinger.application.desmond.enhsamp)
B_KEY (in schrodinger.application.matsci.desmondutils)	BasisSet (in schrodinger.application.jaguar.basis)	BOHR (in schrodinger.application.jaguar.autots_constants)
B_KEY (in Crystal)	BasisSetColumns (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets)	BOLD_FONT (in schrodinger.ui.widget.default)
B_PARAM (in ParserWrapper)	BasisSetDelegate (in schrodinger.application.jaguar.gui.input_tab_widgets)	BOLD_FONT (in schrodinger.ui.widget.tkinterwidget)
back() (in SwigDoubleVector)	BasisSetModel (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets)	BOLTZ (in schrodinger.application.jaguar.autots_constants)
back() (in SwigDoubleVector3)	BasisSetProxyModel (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets)	BOLTZMANN (in schrodinger.application.desmond.bennett)
back() (in SwigIntVector)	BasisSetSelector (in schrodinger.application.matsci.chargegui)	BOLTZMANN (in schrodinger.application.desmond.packages.msys.thermalize)
back() (in SwigStringVector)	BasisSetSubTab (in schrodinger.application.jaguar.gui.tabs.input_sub_tabs.basis_set)	BOLTZMANN_CONST (in schrodinger.application.desmond.fep_net_charge)
back() (in SwigUInt64Vector)	BasisSetTableView (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets)	boltzmann_probability() (in SimulatedAnnealing)
back() (in SwigUnsignedIntVector)	BasisType (in schrodinger.application.matsci.espresso.qeinput)	BOLTZMANN_SCALING (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
back() (in SwigUnsignedIntVector2)	BASNAMLEN (in schrodinger.infra.mm)	Bond (in schrodinger.application.desmond.packages.msys)
back() (in SwigVectorIntIntPair)	BBTRANS_PROP (in schrodinger.application.matsci.amorphous)	bond (in Category)
back() (in DoubleDoubleList)	BC_EFIELD_KEY (in EsmType)	BOND (in Coord)
back() (in DoubleList)	BC_KEY (in EsmType)	bond (in _StructureAtom)
back() (in StringList)	bc_type (in EsmType)	bond() (in _FFIO)
back() (in SwigAtomList)	BC_W_KEY (in EsmType)	bond() (in System)
back() (in SwigAtomPairList)	bcc() (in HighSymmetryKPath)	bond() (in SystemPtr)
back() (in SwigAtomPairWithValueList)	BCLOSE (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	bond() (in Structure)
back() (in SwigAtomQueryParamsList)	BCLOSE (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	bond1 (in DisulfideBond)
back() (in SwigDcNonPbcAtomIdxList)	BCLOSE (in schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer)	bond2 (in DisulfideBond)
back() (in SwigDcPbcAtomList)	BCLOSE (in schrodinger.application.desmond.packages.enhanced_sampling.mexpParser)	BOND_ACTIVE (in schrodinger.application.jaguar.autots_constants)
back() (in SwigPiCationList)	bctet1() (in HighSymmetryKPath)	bond_angle_data_set (in Report)
back() (in SwigPiPiInteractionList)	bctet2() (in HighSymmetryKPath)	BOND_ANGLES (in schrodinger.protein._reliability)
back() (in SwigRingList)	BDE_ENERGY (in schrodinger.application.matsci.property_names)	BOND_BALLNSTICK (in schrodinger.application.bioluminate.pml_menus)
back() (in SwigSaltBridgeList)	BDE_PRODUCT_TITLES (in schrodinger.application.matsci.property_names)	BOND_BALLNSTICK (in schrodinger.structure)
back() (in stringvector)	BDE_REACTANT_TITLE (in schrodinger.application.matsci.property_names)	bond_builtin_prop (in schrodinger.trajectory.ffstructure)
back() (in SwigDoubleVector)	becomeRoot() (in DebugEventListener)	BOND_CROSSOVER (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
back() (in SwigDoubleVector3)	becomeRoot() (in DebugEventSocketProxy)	bond_crossover() (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
back() (in SwigIntVector)	becomeRoot() (in DebugTreeAdaptor)	BOND_EQ_LENGTH_KEY (in schrodinger.application.matsci.cgforcefield)
back() (in SwigStringVector)	becomeRoot() (in TraceDebugEventListener)	BOND_FORCE_CONSTANT_KEY (in schrodinger.application.matsci.cgforcefield)
back() (in SwigUInt64Vector)	becomeRoot() (in BaseTreeAdaptor)	bond_in_ring() (in schrodinger.application.canvas.r_group)
back() (in SwigUnsignedIntVector)	becomeRoot() (in TreeAdaptor)	bond_length_cache (in BaseMoiety)
back() (in SwigUnsignedIntVector2)	BEDROC_ALPHA (in schrodinger.application.glide.packages.ensemble_optimizer)	bond_length_data_set (in Report)
back() (in SwigVectorIntIntPair)	before_lower_edge() (in schrodinger.application.matsci.nano.xtal)	BOND_LENGTHS (in schrodinger.protein._reliability)
back() (in SwigDoubleVector)	beforeStep() (in PhpProject)	BOND_NONE (in schrodinger.application.bioluminate.pml_menus)
back() (in SwigDoubleVector3)	BEFORESUPERPOSITION (in ParserWrapper)	BOND_NOSTYLE (in schrodinger.structure)
back() (in SwigIntVector)	BEGIN (in schrodinger.application.desmond.antlr3.treewizard)	BOND_ORDER_ACTIVE (in schrodinger.application.jaguar.autots_constants)
back() (in SwigStringVector)	begin (in MMrange)	BOND_ORDERS_CHOICES (in ParserWrapper)
back() (in SwigUInt64Vector)	begin() (in SwigDoubleVector)	BOND_ORDERS_DEFAULT (in ParserWrapper)
back() (in SwigUnsignedIntVector)	begin() (in SwigDoubleVector3)	BOND_ORDERS_THRESHOLD (in ParserWrapper)
back() (in SwigUnsignedIntVector2)	begin() (in SwigIntVector)	bond_props (in System)
back() (in SwigVectorIntIntPair)	begin() (in SwigStringVector)	bond_stretch_energy() (in schrodinger.application.qsite.output)
back() (in SwigDoubleVector)	begin() (in SwigUInt64Vector)	BOND_SUM_THRESH (in ReactantMolecule)
back() (in SwigDoubleVector3)	begin() (in SwigUnsignedIntVector)	bond_t (in schrodinger.application.desmond.packages.msys._msys)
back() (in SwigIntVector)	begin() (in SwigUnsignedIntVector2)	bond_total (in _StructureAtom)
back() (in SwigStringVector)	begin() (in SwigVectorIntIntPair)	BOND_TUBE (in schrodinger.structure)
back() (in SwigUInt64Vector)	begin() (in DoubleDoubleList)	BOND_TYPES_R2S (in schrodinger.thirdparty.rdkit_adapter)
back() (in SwigUnsignedIntVector)	begin() (in DoubleList)	BOND_TYPES_S2R (in schrodinger.thirdparty.rdkit_adapter)
back() (in SwigUnsignedIntVector2)	begin() (in StringList)	BOND_WIRE (in schrodinger.application.bioluminate.pml_menus)
back() (in SwigVectorIntIntPair)	begin() (in StructureReader)	BOND_WIRE (in schrodinger.structure)
back() (in SwigDoubleVector)	begin() (in SwigAtomList)	bondAromatic() (in AnnotatedSystem)
back() (in SwigIntVector)	begin() (in SwigAtomPairList)	BondCharge (in schrodinger.application.jaguar.results)
back() (in SwigPhpFpTypeVector)	begin() (in SwigAtomPairWithValueList)	bondchg_repulsion_energy() (in schrodinger.application.qsite.output)
back() (in SwigSizetVector)	begin() (in SwigAtomQueryParamsList)	bondCount() (in SystemPtr)
back() (in SwigStringVector)	begin() (in SwigDcNonPbcAtomIdxList)	bondCountForAtom() (in SystemPtr)
back() (in SwigUnsignedIntVector)	begin() (in SwigDcPbcAtomList)	bonded_atoms (in Atom)
back() (in SwigVectorDoubleVector)	begin() (in SwigPiCationList)	bonded_atoms (in _StructureAtom)
back() (in SwigVectorIntVector)	begin() (in SwigPiPiInteractionList)	bonded_atoms() (in SchrodStruc)
back() (in SwigVectorPhpSitePhpSite)	begin() (in SwigRingList)	bonded_atoms() (in Struc)
back() (in SwigVectorSizetVector)	begin() (in SwigSaltBridgeList)	bondedAtomIdInSameRes() (in PolymerToFragments)
back() (in SwigVectorStringVector)	begin() (in stringvector)	bondedAtoms() (in SystemPtr)
back() (in SwigDoubleVector)	begin() (in SwigDoubleVector)	BondError (in schrodinger.application.jaguar.autots_exceptions)
back() (in SwigDoubleVector3)	begin() (in SwigDoubleVector3)	bondfields (in schrodinger.application.desmond.packages.viparr1.plugins)
back() (in SwigIntVector)	begin() (in SwigIntVector)	BONDING_CHOICES (in ParserWrapper)
back() (in SwigStringVector)	begin() (in SwigStringVector)	BONDING_DEFAULT (in ParserWrapper)
back() (in SwigUInt64Vector)	begin() (in SwigUInt64Vector)	BONDING_THRESHOLD (in ParserWrapper)
back() (in SwigUnsignedIntVector)	begin() (in SwigUnsignedIntVector)	bondInRingSize() (in AnnotatedSystem)
back() (in SwigUnsignedIntVector2)	begin() (in SwigUnsignedIntVector2)	BONDLENGTH (in Constants)
back() (in SwigVectorIntIntPair)	begin() (in SwigVectorIntIntPair)	bondmap() (in _FEPIO)
back_transparency (in Surface)	begin() (in SwigDoubleVector)	bondMatchingEdges() (in NanoTube)
BACKBONE (in schrodinger.application.bioluminate.pml_menus)	begin() (in SwigDoubleVector3)	bondorders (in Reader)
BACKBONE_ADJOINING_ATOM_PROP (in schrodinger.application.matsci.property_names)	begin() (in SwigIntVector)	bondPair() (in ConnectionStorage)
backbone_asl (in Jcoupling)	begin() (in SwigStringVector)	BONDPENALTYTHRESH (in ReactionPath)
BACKBONE_ATOM_NAME (in schrodinger.application.desmond.struc)	begin() (in SwigUInt64Vector)	bondPropCount() (in SystemPtr)
BACKBONE_ATOM_PROP (in schrodinger.application.matsci.property_names)	begin() (in SwigUnsignedIntVector)	bondPropIndex() (in SystemPtr)
backbone_dihedral	begin() (in SwigUnsignedIntVector2)	bondPropName() (in SystemPtr)
backbone_dihedral (in Rama)	begin() (in SwigVectorIntIntPair)	bondPropType() (in System)
backbone_dihedral_data_set (in Report)	begin() (in SwigDoubleVector)	bondPropType() (in SystemPtr)
BACKBONE_DIHEDRALS (in schrodinger.protein._reliability)	begin() (in SwigDoubleVector3)	bondRingCount() (in AnnotatedSystem)
backbone_dihedrals (in schrodinger.protein.analysis_params)	begin() (in SwigIntVector)	bondRings() (in AnnotatedSystem)
BACKBONE_INTERACTION (in StructuralInteractionFingerprintGenerator)	begin() (in SwigStringVector)	BondRotator (in schrodinger.trajectory)
backbone_pdbatoms (in schrodinger.trajectory.proteininteractionsfinder)	begin() (in SwigUInt64Vector)	BondRotator (in schrodinger.trajectory.BondRotator)
BACKBONE_POS (in StructuralInteractionFingerprintGenerator)	begin() (in SwigUnsignedIntVector)	bonds (in Atom)
backClicked() (in ExceptionDialog)	begin() (in SwigUnsignedIntVector2)	bonds (in Ct)
backend() (in App)	begin() (in SwigVectorIntIntPair)	bonds (in System)
BACKEND_ERROR (in JobStatus)	begin() (in SwigDoubleVector)	bonds (in schrodinger.application.desmond.packages.viparr1.plugins)
backtrack() (in DEE_Backtracking)	begin() (in SwigIntVector)	bonds() (in SystemPtr)
BacktrackingFailed (in schrodinger.application.desmond.antlr3.exceptions)	begin() (in SwigPhpFpTypeVector)	BONDS_HARMONIC_KEY (in schrodinger.application.matsci.cgforcefield)
backup (in _BasisSet)	begin() (in SwigSizetVector)	BONDS_INTERNAL_KEY (in schrodinger.application.matsci.cgforcefield)
backup() (in CfgAtom)	begin() (in SwigStringVector)	bondsForAtom() (in SystemPtr)
backup() (in Key)	begin() (in SwigUnsignedIntVector)	bondsForCt() (in SystemPtr)
backup_file() (in schrodinger.job.queue)	begin() (in SwigVectorDoubleVector)	bondTo() (in sketcherAtom)
backupFile() (in schrodinger.trajectory.prody.writenmd)	begin() (in SwigVectorIntVector)	bondToH() (in ConnectionStorage)
BackwardsReader (in schrodinger.pipeline.pipeutils)	begin() (in SwigVectorPhpSitePhpSite)	BondType (in schrodinger.structure)
bad() (in schrodinger.application.desmond.packages.msys._msys)	begin() (in SwigVectorSizetVector)	BONDWEIGHT (in ParserWrapper)
BAD_CONTACT (in schrodinger.application.desmond.mdpose.mdpose_analysis)	begin() (in SwigVectorStringVector)	bool
BAD_LICENSE (in schrodinger.infra._licensing)	begin() (in SwigDoubleVector)	BOOL (in schrodinger.utils.preferences)
BAD_LICENSE (in schrodinger.infra.licensing)	begin() (in SwigDoubleVector3)	BOOL_OPS (in schrodinger.application.bioluminate.propfilter)
BAD_RSA (in schrodinger.infra._licensing)	begin() (in SwigIntVector)	boolean() (in schrodinger.utils.sea)
BAD_RSA (in schrodinger.infra.licensing)	begin() (in SwigStringVector)	BooleanDatabaseCriterion (in schrodinger.application.bioluminate.propfilter)
BAD_SCORE (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	begin() (in SwigUInt64Vector)	BooleanVar (in schrodinger.ui.widget.tkinterwidget)
BAD_STATUS_TEXT (in schrodinger.test.stu.constants)	begin() (in SwigUnsignedIntVector)	BoolParam (in schrodinger.tasks.parameters)
BAD_STRUCTURE (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	begin() (in SwigUnsignedIntVector2)	BoostTestFailure
BAD_TZ (in schrodinger.infra._licensing)	begin() (in SwigVectorIntIntPair)	boot() (in Engine)
BAD_TZ (in schrodinger.infra.licensing)	begin() (in StringStringMap)	bootstrap() (in schrodinger.application.desmond.bennett)
BAD_VERSION (in schrodinger.infra._licensing)	begin_drawing() (in schrodinger.application.desmond.maestro)	BOPEN (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
BAD_VERSION (in schrodinger.infra.licensing)	beginBacktrack() (in DebugEventListener)	BOPEN (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
BADAUTH (in schrodinger.infra._licensing)	beginBacktrack() (in DebugEventSocketProxy)	BOPEN (in schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer)
BADAUTH (in schrodinger.infra.licensing)	beginBacktrack() (in DebugParser)	BOPEN (in schrodinger.application.desmond.packages.enhanced_sampling.mexpParser)
BADCHECKSUM (in schrodinger.infra._licensing)	beginGroup() (in Preferences)	BORROW_DELETE_ERR (in schrodinger.infra._licensing)
BADCHECKSUM (in schrodinger.infra.licensing)	beginInsertColumns() (in RowModel)	BORROW_DELETE_ERR (in schrodinger.infra.licensing)
BADCODE (in schrodinger.infra._licensing)	beginInsertRows() (in RowModel)	BORROW_DOWN (in schrodinger.infra._licensing)
BADCODE (in schrodinger.infra.licensing)	beginMoveColumns() (in RowModel)	BORROW_DOWN (in schrodinger.infra.licensing)
BADCODE_V71_LK (in schrodinger.infra._licensing)	beginMoveRows() (in RowModel)	BORROW_ERROR (in schrodinger.infra._licensing)
BADCODE_V71_LK (in schrodinger.infra.licensing)	beginOS() (in Preferences)	BORROW_ERROR (in schrodinger.infra.licensing)
BADCODE_V71_SIGN (in schrodinger.infra._licensing)	beginRemoveColumns() (in RowModel)	BORROW_EXPIRED (in schrodinger.infra._licensing)
BADCODE_V71_SIGN (in schrodinger.infra.licensing)	beginRemoveRows() (in RowModel)	BORROW_EXPIRED (in schrodinger.infra.licensing)
BADCODE_V80_LK (in schrodinger.infra._licensing)	beginResetModel() (in RowModel)	BORROW_LINGER_ERR (in schrodinger.infra._licensing)
BADCODE_V80_LK (in schrodinger.infra.licensing)	beginResync() (in DebugEventListener)	BORROW_LINGER_ERR (in schrodinger.infra.licensing)
BADCODE_V80_SIGN (in schrodinger.infra._licensing)	beginResync() (in DebugEventSocketProxy)	BORROW_MATCH_ERR (in schrodinger.infra._licensing)
BADCODE_V80_SIGN (in schrodinger.infra.licensing)	beginResync() (in DebugParser)	BORROW_MATCH_ERR (in schrodinger.infra.licensing)
BADCODE_V81_LK (in schrodinger.infra._licensing)	beginResync() (in BaseRecognizer)	BORROW_RETURN_EARLY_ERR (in schrodinger.infra._licensing)
BADCODE_V81_LK (in schrodinger.infra.licensing)	BEHIND (in PBCBond)	BORROW_RETURN_EARLY_ERR (in schrodinger.infra.licensing)
BADCODE_V81_SIGN (in schrodinger.infra._licensing)	bennett (in schrodinger.application.desmond)	BORROW_RETURN_SERVER_ERR (in schrodinger.infra._licensing)
BADCODE_V81_SIGN (in schrodinger.infra.licensing)	bennett() (in CalcBAR)	BORROW_RETURN_SERVER_ERR (in schrodinger.infra.licensing)
BADCODE_V81_SIGN2 (in schrodinger.infra._licensing)	best_scoring_element() (in Ensemble_Priority_Queue)	BORROW_TOOLONG (in schrodinger.infra._licensing)
BADCODE_V81_SIGN2 (in schrodinger.infra.licensing)	beta (in _FFIOStretchFBHW)	BORROW_TOOLONG (in schrodinger.infra.licensing)
BADCODE_V84_LK (in schrodinger.infra._licensing)	BETA_IDX (in schrodinger.application.matsci.nano.interface_mod)	BOTTOM_BAR (in schrodinger.application.msv.gui.stylesheets)
BADCODE_V84_LK (in schrodinger.infra.licensing)	BETA_KEY (in schrodinger.application.matsci.desmondutils)	BOTTOM_DEFAULT (in schrodinger.application.matsci.nano.slab)
BADCODE_V84_SIGN (in schrodinger.infra._licensing)	BETA_KEY (in Crystal)	BOTTOM_DOCK_AREA (in schrodinger.ui.qt.appframework)
BADCODE_V84_SIGN (in schrodinger.infra.licensing)	BETA_ORBITALS (in SurfacesSubTab)	BOTTOM_LAYER_CHOICES (in schrodinger.application.matsci.nano.interface_mod)
BADCODE_V84_SIGN2 (in schrodinger.infra._licensing)	BETA_PARAM (in ParserWrapper)	BOTTOM_LAYER_DEFAULT (in schrodinger.application.matsci.nano.interface_mod)
BADCODE_V84_SIGN2 (in schrodinger.infra.licensing)	beta_polar() (in schrodinger.application.jaguar.textparser)	BOTTOM_TOOLBUTTON_HEIGHT (in schrodinger.ui.qt.appframework)
BADCOMM (in schrodinger.infra._licensing)	beta_polar_precision (in JaguarResults)	boundary_condition (in _DesmondFrame)
BADCOMM (in schrodinger.infra.licensing)	BETA_STRAND_PROPENSITY (in schrodinger.application.msv.domain.residue)	BoundaryType (in schrodinger.application.matsci.espresso.qeinput)
BADCOMMAND (in schrodinger.infra._licensing)	beta_strand_propensity (in Residue)	BOUNDING_BOX_ADJUST_VALUE (in schrodinger.graphics3d.common)
BADCOMMAND (in schrodinger.infra.licensing)	BETA_STRAND_PROPENSITY_COLORS (in schrodinger.application.msv.gui.color)	BOUNDING_BOX_INIT_VALUE (in schrodinger.graphics3d.arrow)
BADDATE (in schrodinger.infra._licensing)	between_groups_global_max (in TwoGroupFingerprintAnalyzer)	BOUNDING_BOX_INIT_VALUE (in schrodinger.graphics3d.box)
BADDATE (in schrodinger.infra.licensing)	between_groups_global_min (in TwoGroupFingerprintAnalyzer)	BOUNDING_BOX_INIT_VALUE (in schrodinger.graphics3d.common)
BADDECFILE (in schrodinger.infra._licensing)	Bfactor_data_set (in Report)	BOUNDING_BOX_INIT_VALUE (in schrodinger.graphics3d.lines)
BADDECFILE (in schrodinger.infra.licensing)	bfactorChanged() (in QuickAnnotationPopup)	BOUNDING_BOX_INIT_VALUE (in schrodinger.graphics3d.polygon)
BADFEATPARAM (in schrodinger.infra._licensing)	BFactorPreset (in schrodinger.application.bioluminate.pml_menus)	BOUNDING_BOX_INIT_VALUE (in schrodinger.graphics3d.quadrilateral)
BADFEATPARAM (in schrodinger.infra.licensing)	BFACTORS (in schrodinger.protein._reliability)	BOUNDING_BOX_INIT_VALUE (in schrodinger.graphics3d.sphere)
BADFEATSET (in schrodinger.infra._licensing)	BFGS (in schrodinger.application.matsci.mecp_mod)	BOUNDING_BOX_INIT_VALUE (in schrodinger.graphics3d.torus)
BADFEATSET (in schrodinger.infra.licensing)	BG_CMD (in BuildGeometry)	boundingBoxCallback() (in Group)
BADFILE (in schrodinger.infra._licensing)	bhomo_prop (in MopacResults71)	BoundingInformation() (in schrodinger.analysis.visanalysis.volumedatastructureutils)
BADFILE (in schrodinger.infra.licensing)	BIDENTATE (in schrodinger.application.matsci.buildcomplex)	BoundingInformationL() (in schrodinger.analysis.visanalysis.volumedatastructureutils)
BADHANDSHAKE (in schrodinger.infra._licensing)	BiDirDualTupleDict (in schrodinger.application.desmond.fepdiff)	boundingRect() (in _StructViewItem)
BADHANDSHAKE (in schrodinger.infra.licensing)	BidirectionalBarDelegate (in schrodinger.application.msv.gui.delegates)	boundingRect() (in _zoomViewItem)
BADHOST (in schrodinger.infra._licensing)	BiDirTupleDict (in schrodinger.application.desmond.fepdiff)	box (in Pbc)
BADHOST (in schrodinger.infra.licensing)	BILAYERSEP (in Constants)	box (in Frame)
BadId (in schrodinger.application.desmond.packages.msys._msys)	BILAYERSHIFT (in Constants)	box (in DuckFrame)
BADKEYDATA (in schrodinger.infra._licensing)	bin_b_factors() (in schrodinger.application.bioluminate.pml_menus)	box (in Frame)
BADKEYDATA (in schrodinger.infra.licensing)	bin_edges (in StatisticalSummary)	Box (in schrodinger.application.matsci.amorphous)
BADPARAM (in schrodinger.infra._licensing)	BinaryThreadSyntax (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)	box (in schrodinger.graphics3d)
BADPARAM (in schrodinger.infra.licensing)	BinaryThreadSyntax (in schrodinger.application.desmond.packages.enhanced_sampling.FcnTypes)	Box (in schrodinger.graphics3d.box)
BADPKG (in schrodinger.infra._licensing)	BIND (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	box (in _DesmondFrame)
BADPKG (in schrodinger.infra.licensing)	BIND (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	box() (in _FepFrame)
BADPLATFORM (in schrodinger.infra._licensing)	Bind (in schrodinger.application.desmond.enhsamp)	BOX_HEIGHT (in schrodinger.ui.propertyselector)
BADPLATFORM (in schrodinger.infra.licensing)	BIND (in schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer)	BOX_WIDTH (in schrodinger.ui.propertyselector)
BadResponse (in schrodinger.test.performance.reporter)	BIND (in schrodinger.application.desmond.packages.enhanced_sampling.mexpParser)	BoxSize (in schrodinger.application.desmond.simulation_block_test)
BADSYSDATE (in schrodinger.infra._licensing)	bind() (in mexpParser)	BoxWithInnerHull (in schrodinger.application.matsci.amorphous)
BADSYSDATE (in schrodinger.infra.licensing)	bind() (in mexpParser)	BRANCH_ATOM_PROP (in schrodinger.application.matsci.amorphous)
BADVENDORDATA (in schrodinger.infra._licensing)	bind_return (in mexpParser)	BRANCH_GEN_ATOM_PROP (in schrodinger.application.matsci.amorphous)
BADVENDORDATA (in schrodinger.infra.licensing)	bind_return (in mexpParser)	BRANCH_MAX_PROP (in schrodinger.application.matsci.amorphous)
balance_alea_prop (in MopacResults71)	binding (in schrodinger.application.desmond.enhsamp)	BRANCH_MAXGEN_ATOM_PROP (in schrodinger.application.matsci.amorphous)
balance_alie_precision (in JaguarResults)	BINDING_SITE_STYLE (in schrodinger.structutils.sitealign)	BRANCH_PCT_ATOM_PROP (in schrodinger.application.matsci.amorphous)
balance_alie_prop (in MopacResults71)	BindingSiteAligner (in schrodinger.structutils.sitealign)	BRANCH_PCT_PROP (in schrodinger.application.matsci.amorphous)
balance_esp_precision (in JaguarResults)	bindSiteChanged() (in QuickAnnotationPopup)	branding_config_chemdb_shell (in schrodinger.application.pldb.packages.pldb_gui_shell_dir)
balance_esp_prop (in MopacResults71)	bins() (in Rdf)	branding_config_materials_shell (in schrodinger.application.pldb.packages.pldb_gui_shell_dir)
ball_atom() (in Workspace)	BIOLUM_EPIT_IDENT (in schrodinger.utils._mmutil)	branding_config_shell (in schrodinger.application.pldb.packages.pldb_gui_shell_dir)
ball_atom() (in schrodinger.application.desmond.maestro)	BIOLUM_EPIT_IDENT (in schrodinger.utils.mmutil)	BREAK (in Icons)
Balloon (in schrodinger.ui.widget.pmwwidget)	bioluminate (in schrodinger.application)	BREAK_TOOLBAR (in ViewerWindow)
BAND_INDEX_KEY (in schrodinger.application.matsci.espresso.qeoutput)	BIOLUMINATE_MAIN (in schrodinger.infra._licensing)	breakBonds() (in _StructureFragmenter)
BAND_STRUCTURE_TAG (in schrodinger.application.matsci.espresso.qeoutput)	BIOLUMINATE_MAIN (in schrodinger.infra.licensing)	breakTemplatePolymer() (in Monomer)
BANDSHAPE (in schrodinger.utils._mmutil)	BIOLUMINATE_MAIN (in schrodinger.infra.mm)	BROWNIE_TEMPLATE (in schrodinger.application.desmond.mapper_msj_generator)
BANDSHAPE (in schrodinger.utils.mmutil)	BIOLUMINATE_MAIN (in schrodinger.utils.license)	BrownieMSJStringer (in schrodinger.application.matsci.desmondutils)
bandshape_utils (in schrodinger.application.matsci)	BIOLUMINATE_PEPTIDE_DESC (in schrodinger.infra._licensing)	browse() (in FileEntry)
BandshapeSpectrumFile (in schrodinger.application.matsci.bandshape_utils)	BIOLUMINATE_PEPTIDE_DESC (in schrodinger.infra.licensing)	browse_for_collection_dir() (in BaseInteractiveEnumeration)
BAndSPreset (in schrodinger.application.bioluminate.pml_menus)	BIOLUMINATE_PEPTIDE_DESC (in schrodinger.infra.mm)	browseDirectory() (in NewJobDirFrame)
BandStructure (in schrodinger.application.matsci.espresso.qeoutput)	BIOLUMINATE_PEPTIDE_DESC (in schrodinger.utils.license)	browseForNewCollection() (in BaseInteractiveEnumeration)
BandsType (in schrodinger.application.matsci.espresso.qeinput)	BIOLUMINATE_PROTEIN_DOCKING (in schrodinger.infra._licensing)	browseSystemFile() (in InputGroup)
BarHeightDelegate (in schrodinger.application.msv.gui.delegates)	BIOLUMINATE_PROTEIN_DOCKING (in schrodinger.infra.licensing)	bsand() (in Bitset)
baroMethodChanged() (in EnsembleTab)	BIOLUMINATE_PROTEIN_DOCKING (in schrodinger.infra.mm)	BTN_DISABLED (in _Step)
BAROSTAT_MAP (in GuiMap)	BIOLUMINATE_PROTEIN_DOCKING (in schrodinger.utils.license)	BTN_ENABLED (in _Step)
BARRIER_1_KEY (in schrodinger.application.matsci.mecp_mod)	BIOLUMINATE_SHARED (in schrodinger.infra._licensing)	BTN_ENTERED (in _Step)
BARRIER_2_KEY (in schrodinger.application.matsci.mecp_mod)	BIOLUMINATE_SHARED (in schrodinger.infra.licensing)	BTN_STATE (in _Step)
BARRIER_KEY (in schrodinger.application.matsci.mecp_mod)	BIOLUMINATE_SHARED (in schrodinger.infra.mm)	bubble_plot() (in ModelCheck)
base (in schrodinger.application.canvas)	BIOLUMINATE_SHARED (in schrodinger.utils.license)	buddy() (in NestedProxy)
BASE64_FAILURE_MSG (in schrodinger.test.stu.outcomes.custom.phase_workups)	bit (in BitArray)	BUFF_SIZE (in schrodinger.infra.mm)
base64_properties (in schrodinger.application.phase.constants)	BIT_EXT (in CanvasKPLS)	BUFSIZE (in schrodinger.protein.assignment)
BASE_ASU_FLAG (in schrodinger.application.matsci.nano.surfaces_interfaces_mod)	BitArray (in schrodinger.application.combiglide.packages.chutils)	BUILD (in schrodinger.application.desmond.cmj)
BASE_ATOMS (in schrodinger.infra._structure)	bitCB() (in CanvasFingerprintGeneratorGUI)	build (in schrodinger.structutils)
BASE_ATOMS (in schrodinger.infra.structure)	bits (in PhpPackedFp)	build() (in AmorphousCellBuilder)
base_branding_config_shell (in schrodinger.application.pldb.packages.pldb_gui_shell_dir)	bits_per_word (in BitArray)	build_add() (in schrodinger.test.scival.run)
base_evaluator() (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	Bitset (in schrodinger.infra.mmbitset)	build_cell() (in schrodinger.application.matsci.nano.sheet)
base_executable (in schrodinger.test.stu)	bitSetOff() (in PolymerBuilderGrowInCellMixin)	build_get() (in schrodinger.test.scival.run)
base_file_dialog() (in schrodinger.ui.qt.filedialog)	bitSetOn() (in PolymerBuilderGrowInCellMixin)	build_id (in PerformanceTestCase)
base_name (in AbstractTask)	bitwise_and (in schrodinger.protein.assignment)	build_kwargs() (in schrodinger.application.matsci.nano.particle)
base_nameChanged() (in AbstractTask)	bitwise_not (in schrodinger.protein.assignment)	build_list() (in schrodinger.test.scival.run)
BASE_OPTIONS_FLAG (in schrodinger.application.matsci.nano.surfaces_interfaces_mod)	bitwise_or (in schrodinger.protein.assignment)	build_protein_helix() (in schrodinger.test.build_test_structures)
base_panel (in schrodinger.application.jaguar.gui)	bitwise_xor (in schrodinger.protein.assignment)	build_stagelinks() (in schrodinger.application.desmond.cmj)
base_sub_tab (in schrodinger.application.jaguar.gui.tabs.input_sub_tabs)	BLACK_COLOR_MAP (in schrodinger.application.combiglide.combenumdock)	build_stages() (in schrodinger.application.desmond.cmj)
base_tab (in schrodinger.application.jaguar.gui.tabs)	blackColorMap (in schrodinger.application.desmond.report_helper)	build_test_structures (in schrodinger.test)
base_url (in URLItem)	blank_line_re (in schrodinger.application.jaguar.textparser)	BUILD_TYPES (in schrodinger.test.performance.reporter)
BASE_URL (in schrodinger.test.stu.common)	BLANK_PATTERN (in ChannelDefinitions)	BUILD_VERSION (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.version_shell)
base_welcome (in schrodinger.utils.welcome_dialog_dir)	BlankableSpinBox (in schrodinger.application.jaguar.gui.input_tab_widgets)	buildAllAttr() (in PhpHypoAdaptor)
base_widgets (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets)	BlankableSpinBoxDelegate (in schrodinger.application.jaguar.gui.input_tab_widgets)	buildBilayer() (in HoneycombBilayers)
BaseAdjacentAlignmentProxyModel (in schrodinger.application.msv.gui.viewmodel)	BlankDebugEventListener (in schrodinger.application.desmond.antlr3.debug)	buildCell() (in AmorphousCellBuilder)
BaseAlignment (in schrodinger.application.msv.domain.alignment)	bld_def (in schrodinger.application.desmond)	buildCellDriver() (in AmorphousCellBuilder)
BaseBlockProperty (in schrodinger.application.desmond.fepdiff)	bld_types (in schrodinger.application.desmond.bld_def)	buildCellNoWrap() (in PolymerBuilderGrowInCellMixin)
basedir() (in TestJobDJ)	bld_ver (in schrodinger.application.desmond)	buildChannelStrDef() (in ChannelDefinitions)
BaseFixedColumnsView (in schrodinger.application.msv.gui.view)	BLKSIZE (in BackwardsReader)	buildComboBox() (in FEPConfigDialog)
BaseFunctionTask (in schrodinger.tasks.tasks)	blobify() (in BitArray)	buildcomplex (in schrodinger.application.matsci)
BaseInteractiveEnumeration (in schrodinger.application.combiglide.combenumdock)	blobify_int_seq() (in ChUtils)	buildCovariance() (in PCA)
BaseJaguarPanel (in schrodinger.application.jaguar.gui.base_panel)	blobify_st() (in ChUtils)	buildCrystalSuperCell() (in Crystal)
BaseJob (in schrodinger.job.queue)	BLOCK (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	buildCrystalUnitCell() (in Crystal)
BaseMoiety (in schrodinger.application.matsci.amorphous)	BLOCK (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	buildDerivedAttributes() (in JaguarOutput)
BaseMsvPopup (in schrodinger.application.msv.gui.popup_dialogs)	BLOCK (in schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer)	buildDockedLigandsMap() (in DockingStage)
BaseMutableParam (in schrodinger.tasks.parameters)	BLOCK (in schrodinger.application.desmond.packages.enhanced_sampling.mexpParser)	builderwidgets (in schrodinger.application.matsci)
BaseProteinAlignmentReader (in schrodinger.application.msv.io.seqio)	Block (in schrodinger.application.desmond.simulation_block_test)	BuilderWithClashDetection (in schrodinger.application.matsci.amorphous)
BaseProteinAlignmentWriter (in schrodinger.application.msv.io.seqio)	block() (in mexpParser)	BuildGeometry
BaseRecognizer (in schrodinger.application.desmond.antlr3.recognizers)	block() (in mexpParser)	buildingBlocksHaveRings() (in BuilderWithClashDetection)
BaseSignalAttribute (in schrodinger.application.msv.utils)	block_list (in FEPIOProperty)	buildLabel() (in FEPConfigDialog)
BaseSubTab (in schrodinger.application.jaguar.gui.tabs.input_sub_tabs.base_sub_tab)	block_list (in FFIOProperty)	buildLattice() (in HoneycombLattice)
BaseSubTab (in schrodinger.application.jaguar.gui.tabs.properties_tab)	BLOCK_NAME (in InteractionReader)	buildLayer() (in Interface)
BaseSuiteJob (in schrodinger.test.scival.jobs)	block_prop_name (in FEPIOBlockProperty)	buildLayers() (in Interface)
BaseSuiteJob (in schrodinger.test.scival.suite)	block_prop_name (in FFIOBlockProperty)	buildLineEdit() (in FEPConfigDialog)
BaseTab (in schrodinger.application.jaguar.gui.tabs.base_tab)	block_recurse() (in schrodinger.application.desmond.packages.viparr1.viparr.maeview)	BuildList (in schrodinger.test.scival.run)
BaseTree (in schrodinger.application.desmond.antlr3.tree)	block_return (in mexpParser)	buildMultiWallTube() (in MultiWalledNanoTube)
BaseTreeAdaptor (in schrodinger.application.desmond.antlr3.tree)	block_return (in mexpParser)	buildNanoTubeSheet() (in NanoTubeSheet)
BaseWelcome (in schrodinger.utils.welcome_dialog_dir.base_welcome)	block_type (in _FEPIOAngleMap)	buildQsarModel() (in PhpProject)
BASIC (in schrodinger.application.matsci.shapes)	block_type (in _FEPIOAtomMap)	buildReorderList() (in Products)
BASIC_RESIDUES (in schrodinger.application.bioluminate.protein)	block_type (in _FEPIOBondMap)	BUILDS_URL (in schrodinger.test.scival.run)
BASIC_RESIDUES (in schrodinger.structutils)	block_type (in _FEPIODihedMap)	buildSlab() (in Surface)
BasicAligner (in schrodinger.application.msv.domain.align)	block_type (in _FEPIOExclMap)	buildTemplateList() (in SketcherBox)
basis (in schrodinger.application.jaguar)	block_type (in _FEPIOPairMap)	buildTree() (in DendrogramTreeBuilder)
Basis (in schrodinger.application.jaguar.gui.input_tab_widgets)	block_type (in _FEPIOSubBlock)	buildTube() (in NanoTube)
BASIS (in InputEntriesColumns)	block_type (in _FFIOAngle)	buildtype (in PerformanceTestCase)
basis (in ProjEntryTuple)	block_type (in _FFIOAngleFBHW)	buildUnitCell() (in HoneycombUnitCell)
basis (in _Basis)	block_type (in _FFIOBond)	bulk_pattern (in MSEnergyGroupAnalysis)
BASIS (in InputEntriesColumnsHB)	block_type (in _FFIOConstraint)	bumpIndexes() (in ZAtom)
BASIS (in InputEntriesColumnsPka)	block_type (in _FFIODihedral)	bumpIndexes() (in ZMatrix)
BASIS (in BasisSetColumns)	block_type (in _FFIOExclusion)	busy_icon_exec() (in schrodinger.application.desmond.util)
BASIS_631G (in schrodinger.application.matsci.basiselements)	block_type (in _FFIOImproperFBHW)	BUSYNEWSERV (in schrodinger.infra._licensing)
basis_changed() (in ProvidesBasisMixin)	block_type (in _FFIOPair)	BUSYNEWSERV (in schrodinger.infra.licensing)
BASIS_FLAG (in schrodinger.application.matsci.chargegui)	block_type (in _FFIOPosFBHW)	Button (in schrodinger.ui.widget.tkinterwidget)
BASIS_FLAG (in schrodinger.application.matsci.clusterstruct)	block_type (in _FFIOPseudo)	button() (in _fakeEvent)
basis_is_supported_for_functional() (in schrodinger.application.jaguar.jaguar_keyword_utils)	block_type (in _FFIORestraint)	BUTTON_LOOK (in Guide)
BASIS_KEY (in schrodinger.application.matsci.nano.particle)	block_type (in _FFIOSite)	button_press_event() (in schrodinger.application.desmond.packages.viparr1.viparr.maeview)
BASIS_LACV3P (in schrodinger.application.matsci.basiselements)	block_type (in _FFIOStretchFBHW)	ButtonBox (in schrodinger.ui.widget.pmwwidget)
BASIS_MIDIX_ALL (in schrodinger.application.matsci.basiselements)	block_type (in _FFIOSubBlock)	buttonChanged() (in QualitySlider)
BASIS_MIDIX_PS (in schrodinger.application.matsci.basiselements)	block_type (in _FFIOVdwtype)	ButtonRole
basis_selector (in schrodinger.application.jaguar.gui)	block_type (in _FFIOVdwtypescombined)	ButtonSymbols
basis_set (in schrodinger.application.jaguar.gui.tabs.input_sub_tabs)	block_type (in _FFIOVirtual)	bval (in Atom)
basis_set() (in schrodinger.application.jaguar.textparser)	BlockDiffer (in schrodinger.application.desmond.fepdiff)	bval (in List)
basis_set_ui (in schrodinger.application.jaguar.gui.ui.input_sub_tabs)	BlockingFunctionTask (in schrodinger.tasks.tasks)	bval (in Map)
basis_set_widgets (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets)	BLOSUM45 (in schrodinger.application.msv.domain.constants)	bwidgets (in schrodinger.application.bioluminate)