Package schrodinger :: Package application :: Package desmond :: Package packages :: Module analysis :: Class ProtProtHbondInter

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Class ProtProtHbondInter

      object --+        
               |        
GeomAnalyzerBase --+    
                   |    
  _CompositeAnalyzer --+
                       |
                      ProtProtHbondInter

Protein-protein hydrogen bond finder.

Returns a dict with four keys: hbond_bb, hbond_sb, hbond_bs, hbond_ss, b for backbone and s for sidechain. Values are list of 2-element tuples (donor AID, acceptor AID).

Instance Methods

__init__(self, msys_model, cms_model, asl)
x.__init__(...) initializes x; see help(type(x)) for signature

_get_hbond_type(self, donor, acceptor)

_postcalc(self, *args)

Inherited from _CompositeAnalyzer (private): _precalc

Inherited from GeomAnalyzerBase: __call__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods

Inherited from GeomAnalyzerBase (private): _get_sites, _sites2gids

Properties

Inherited from object: __class__

Method Details

init(self, msys_model, cms_model, asl)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

_get_hbond_type(self, donor, acceptor)

Parameters:

donor (int) - index of donor in the protein structure

_postcalc(self, *args)

Overrides: GeomAnalyzerBase._postcalc: (inherited documentation)