Class ProtProtPiInter

      object --+        
               |        
GeomAnalyzerBase --+    
                   |    
    _MaestroAnalysis --+
                       |
                      ProtProtPiInter

Protein-protein Pi interaction finder.

Returns a dict with two keys: pi-pi and pi-cat. Values are list of 2-element tuples

Instance Methods

[hide private]

__init__(self, msys_model, cms_model, asl)
x.__init__(...) initializes x; see help(type(x)) for signature

_postcalc(self, calc, _, fr)

Inherited from _MaestroAnalysis (private): _getCentered, _precalc

Inherited from GeomAnalyzerBase: __call__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods

[hide private]

Inherited from GeomAnalyzerBase (private): _get_sites, _sites2gids

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, msys_model, cms_model, asl)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

asl (str) - ASL expression to select protein atoms
msys_model (msys.System)
cms_model (schrodinger.structure.Structure)

Overrides: object.__init__

_postcalc(self, calc, _, fr)

Overrides: GeomAnalyzerBase._postcalc: (inherited documentation)

Class ProtProtPiInter

__init__(self, msys_model, cms_model, asl) (Constructor)

_postcalc(self, calc, _, fr)

init(self, msys_model, cms_model, asl)
(Constructor)